[R] SNPRelate package error

[Pascal Oettli]

Hello,

Why do you think it is a package error?

The error message says that "the file [...] has different numbers of 
columns". Please check that file first.

Regards,
Pascal


Le 22/01/2013 16:05, sun-ye at scib.ac.cn a écrit :
> Dear,
>
>
> I am using the R package SNPRelate but I found an error when I run the
> following command. Do you know what might be the problem? Thanks in
> advance.
>
>
>> vcf.fn <- system.file("extdata","str.vcf",package="SNPRelate")
>> snpgdsVCF2GDS(vcf.fn,"test.gds")
>
>
> Start snpgdsVCF2GDS ...
>          Extracting bi-allelic and polymorhpic SNPs.
>          Scanning ...
>          file: D:/Program Files/R/R-2.14.2/library/SNPRelate/extdata/str.vcf
> Error in scan.vcf.marker(fn, method) :
>    The file (D:/Program Files/R/R-2.14.2/library/SNPRelate/extdata/str.vcf) has different numbers of columns.
>
>
> Best regrads
>
>
> --
> Dr. Ye SUN
> Key Laboratory of Plant Resources Conservation and Sustainable Utilization
> South China Botanical Garden, Chinese Academy of Sciences
> Xingke Road 723,Tianhe District, Guangzhou 510650, PR China
>
>
>
>
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