[R] proportional weights
John Fox
jfox at mcmaster.ca
Thu Feb 6 14:17:13 CET 2014
Dear Marco and Goran,
Perhaps the documentation could be clearer, but it is after all a brief help page. Using weights of 2 to lm() is *not* equivalent to entering the observation twice. The weights are variance weights, not case weights.
You can see this by looking at the whole summary() output for the models, not just the residual standard errors:
------------- snip ---------
> summary(lm(c(1,2,3,1,2,3)~c(1,2.1,2.9,1.1,2,3),weight=rep(1,6)))
Call:
lm(formula = c(1, 2, 3, 1, 2, 3) ~ c(1, 2.1, 2.9, 1.1, 2, 3),
weights = rep(1, 6))
Residuals:
1 2 3 4 5 6
0.06477 -0.08728 0.07487 -0.03996 0.01746 -0.02986
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -0.11208 0.08066 -1.39 0.237
c(1, 2.1, 2.9, 1.1, 2, 3) 1.04731 0.03732 28.07 9.59e-06 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 0.07108 on 4 degrees of freedom
Multiple R-squared: 0.9949, Adjusted R-squared: 0.9937
F-statistic: 787.6 on 1 and 4 DF, p-value: 9.59e-06
> summary(lm(c(1,2,3,1,2,3)~c(1,2.1,2.9,1.1,2,3),weight=rep(2,6)))
Call:
lm(formula = c(1, 2, 3, 1, 2, 3) ~ c(1, 2.1, 2.9, 1.1, 2, 3),
weights = rep(2, 6))
Residuals:
1 2 3 4 5 6
0.09160 -0.12343 0.10589 -0.05652 0.02469 -0.04223
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -0.11208 0.08066 -1.39 0.237
c(1, 2.1, 2.9, 1.1, 2, 3) 1.04731 0.03732 28.07 9.59e-06 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 0.1005 on 4 degrees of freedom
Multiple R-squared: 0.9949, Adjusted R-squared: 0.9937
F-statistic: 787.6 on 1 and 4 DF, p-value: 9.59e-06
------------- snip -------------
Notice that while the residual standard errors differ, the coefficients and their standard errors are identical. There are compensating changes in the residual variance and the weighted sum of squares and products matrix for X.
In contrast, literally entering each observation twice reduces the coefficient standard errors by a factor of sqrt((6 - 2)/(12 - 2)), i.e., the square root of the relative residual df of the models:
------------- snip --------
> summary(lm(rep(c(1,2,3,1,2,3),2)~rep(c(1,2.1,2.9,1.1,2,3),2)))
Call:
lm(formula = rep(c(1, 2, 3, 1, 2, 3), 2) ~ rep(c(1, 2.1, 2.9,
1.1, 2, 3), 2))
Residuals:
Min 1Q Median 3Q Max
-0.087276 -0.039963 -0.006201 0.064768 0.074874
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -0.11208 0.05101 -2.197 0.0527
rep(c(1, 2.1, 2.9, 1.1, 2, 3), 2) 1.04731 0.02360 44.374 8.12e-13
(Intercept) .
rep(c(1, 2.1, 2.9, 1.1, 2, 3), 2) ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Residual standard error: 0.06358 on 10 degrees of freedom
Multiple R-squared: 0.9949, Adjusted R-squared: 0.9944
F-statistic: 1969 on 1 and 10 DF, p-value: 8.122e-13
---------- snip -------------
I hope this helps,
John
------------------------------------------------
John Fox, Professor
McMaster University
Hamilton, Ontario, Canada
http://socserv.mcmaster.ca/jfox/
On Thu, 6 Feb 2014 09:27:22 +0100
Göran Broström <goran.brostrom at umu.se> wrote:
> On 05/02/14 22:40, Marco Inacio wrote:
> > Hello all, can help clarify something?
> >
> > According to R's lm() doc:
> >
> >> Non-NULL weights can be used to indicate that different observations
> >> have different variances (with the values in weights being inversely
> >> *proportional* to the variances); or equivalently, when the elements
> >> of weights are positive integers w_i, that each response y_i is the
> >> mean of w_i unit-weight observations (including the case that there
> >> are w_i observations equal to y_i and the data have been summarized).
> >
> > Since the idea here is *proportion*, not equality, shouldn't the vectors
> > of weights x, 2*x give the same result? And yet they don't, standard
> > errors differs:
> >
> >>> summary(lm(c(1,2,3,1,2,3)~c(1,2.1,2.9,1.1,2,3),weight=rep(1,6)))$sigma
> >> [1] 0.07108323
> >>> summary(lm(c(1,2,3,1,2,3)~c(1,2.1,2.9,1.1,2,3),weight=rep(2,6)))$sigma
> >> [1] 0.1005269
>
> The weights are in fact case weights, i.e., a weight of 2 is the same as including the corresponding item twice. I agree that the documentation is no wonder of clarity in this respect.
>
> Btw, note that, in your example, (0.1005269 / 0.07108323)^2 = 2, your constant weight.
>
> Göran Broström
> >
> >
> > So what if I know a-priori, observation A has variance 2 times bigger
> > than observation B? Both weights=c(1,2) and weights=c(2,4) (and so on)
> > represent very well this knowledge, but we get different regression
> > (since sigma is different).
> >
> >
> > Also, if we do the same thing with a glm() model, than we get a lot of
> > other differences like in the deviance.
> >
> > ______________________________________________
> > R-help at r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
> >
>
> ______________________________________________
> R-help at r-project.org mailing list
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> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
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