[R] fast way to create composite matrix based on mixed indices?
Matthew Keller
mckellercran at gmail.com
Fri Sep 18 17:11:19 CEST 2015
Brilliant Denes. Thank you for your help. This worked and is obviously much
faster than a loop...
On Thu, Sep 17, 2015 at 3:22 PM, Dénes Tóth <toth.denes at ttk.mta.hu> wrote:
> Hi Matt,
>
> you could use matrix indexing. Here is a possible solution, which could be
> optimized further (probably).
>
> # The old matrix
> (old.mat <- matrix(1:30,nrow=3,byrow=TRUE))
> # matrix of indices
> index <- matrix(c(1,1,1,4,
> 1,3,5,10,
> 2,2,1,3,
> 2,1,4,8,
> 2,3,9,10),
> nrow=5,byrow=TRUE,
> dimnames=list(NULL,
> c('new.mat.row','old.mat.row',
> 'old.mat.col.start','old.mat.col.end')))
> # expected result
> new.mat <- matrix(c(1:4,25:30,11:13,4:8,29:30),
> byrow=TRUE, nrow=2)
> #
> # column indices
> ind <- mapply(seq, index[, 3], index[,4],
> SIMPLIFY = FALSE, USE.NAMES = FALSE)
> ind_len <- vapply(ind, length, integer(1))
> ind <- unlist(ind)
>
> #
> # old indices
> old.ind <- cbind(rep(index[,2], ind_len), ind)
> #
> # new indices
> new.ind <- cbind(rep(index[,1], ind_len), ind)
> #
> # create the new matrix
> result <- matrix(NA_integer_, max(index[,1]), max(index[,4]))
> #
> # fill the new matrix
> result[new.ind] <- old.mat[old.ind]
> #
> # check the results
> identical(result, new.mat)
>
>
> HTH,
> Denes
>
>
>
>
>
> On 09/17/2015 10:36 PM, Matthew Keller wrote:
>
>> HI all,
>>
>> Sorry for the title here but I find this difficult to describe succinctly.
>> Here's the problem.
>>
>> I want to create a new matrix where each row is a composite of an old
>> matrix, but where the row & column indexes of the old matrix change for
>> different parts of the new matrix. For example, the second row of new
>> matrix (which has , e.g., 10 columns) might be columns 1 to 3 of row 2 of
>> old matrix, columns 4 to 8 of row 1 of old matrix, and columns 9 to 10 of
>> row 3 of old matrix.
>>
>> Here's an example in code:
>>
>> #The old matrix
>> (old.mat <- matrix(1:30,nrow=3,byrow=TRUE))
>>
>> #matrix of indices to create the new matrix from the old one.
>> #The 1st column gives the row number of the new matrix
>> #the 2nd gives the row of the old matrix that we're going to copy into the
>> new matrix
>> #the 3rd gives the starting column of the old matrix for the row in col 2
>> #the 4th gives the end column of the old matrix for the row in col 2
>> index <- matrix(c(1,1,1,4,
>> 1,3,5,10,
>> 2,2,1,3,
>> 2,1,4,8,
>> 2,3,9,10),
>> nrow=5,byrow=TRUE,
>>
>>
>> dimnames=list(NULL,c('new.mat.row','old.mat.row','old.mat.col.start','old.mat.col.end')))
>>
>> I will be given old.mat and index and want to create new.mat from them.
>>
>> I want to create a new.matrix of two rows that looks like this:
>> new.mat <- matrix(c(1:4,25:30,11:13,4:8,29:30),byrow=TRUE,nrow=2)
>>
>> So here, the first row of new.mat is columns 1 to 4 of row 1 of the
>> old.mat
>> and columns 5 to 10 of row 3 of old.mat.
>>
>> new.mat and old.mat will always have the same number of columns but the
>> number of rows could differ.
>>
>> I could accomplish this in a loop, but the real problem is quite large
>> (new.mat might have 1e8 elements), and so a for loop would be
>> prohibitively
>> slow.
>>
>> I may resort to unix tools and use a shell script, but wanted to first see
>> if this is doable in R in a fast way.
>>
>> Thanks in advance!
>>
>> Matt
>>
>>
>>
--
Matthew C Keller
Asst. Professor of Psychology
University of Colorado at Boulder
www.matthewckeller.com
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