ed_isfahani at yahoo.com
Sat Dec 31 20:22:10 CET 2016
hello all,I am following this link http://genomicsclass.github.io/book/pages/GEOquery.html for importing data.but I have a problem in a step of (Access GSE Data Tables from GEO).in the example of tutorial there are 266 samples,but by this function
dim(pData(gse[]))head(pData(gse[])[, 1:3]) the result in R is:
> dim(pData(gse[])) 266 47> head(pData(gse[])[, 1:3]) title geo_accession statusGSM540108 BC1 GSM540108 Public on May 05 2010GSM540109 BC2 GSM540109 Public on May 05 2010GSM540110 BC3 GSM540110 Public on May 05 2010GSM540111 BC4 GSM540111 Public on May 05 2010GSM540112 BC5 GSM540112 Public on May 05 2010GSM540113 BC6 GSM540113 Public on May 05 2010
where is another samples?
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