[R] how to perform multiple comparison?

laomeng_3 laomeng_3 at 163.com
Thu May 19 17:56:39 CEST 2016

Hi all:
As to the anova, we can perform multiple comparison via TukeyHSD.
But as to chi-square test for frequency table,how to perform multiple comparison?

For example, if I want to compare 3 samples' ratio(the data has 3 rows,each row corresponds to 1 sample,and has 2 columns,each column corresponds to positive and negative respectively).

      [,1] [,2]
[1,]    6   23
[2,]   30   14
[3,]    8    3


       Pearson's Chi-squared test

data:  dat
X-squared = 17.9066, df = 2, p-value = 0.0001293

The result shows that the difference between the 3 samples is significant.But if I want to perform multiple comparison to find out which pair of samples is  significantly different,which function should be used?

Many thanks for your help.

My best

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