[R] svyglm

Luciane Maria Pilotto lutipilotto at yahoo.com.br
Mon Dec 4 15:56:44 CET 2017


Hi,
I am trying to run analyzes incorporating sample weight, strata and cluster (three-stage sample) with PNS data (national health survey) and is giving error. I describe below the commands used. I could not make the code reproducible properly.
Thanks,
#################################################
library(survey)####change to 0 and 1 variable outcomedent2<-ifelse(consdentcat2==2,0,1)table(dent2) dent2<-as.factor(dent2)str(dent2)reg<-cbind(reg, dent2)
#tchange to factor str(sexo)reg$sexo <- as.factor((reg$sexo))
#################
pns2013design<-svydesign(id=~upa, nest=TRUE, strata = estrato, weight = peso, data = reg)

PNS<-svyglm(dent2~sexo,design=pns2013design, method="logistic", data = reg)

Error in logistic(x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,  :   unused arguments (x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,################################################################################################################################################################

###NOT running SVYGLM command#data for R-helpbteste <- reg[1:10, c(1, 4, 26, 27, 28)]#dput(bteste)###omitting most of the lines "9967.223281", "9967.870849", "9968.207979", "997.0045537",     "997.1451224", "997.1574275", "997.1782368", "997.1812338",     "997.2480231", "997.2531051", "997.3803145", "997.4345619",     "997.4363662", "997.5344599", "997.5964572", "997.7439813",     "997.8360773", "997.8770935", "997.8811374", "997.9147096",     "997.9563562", "9974.30392", "9974.344482", "9975.656981",     "9977.382263", "9979.999691", "998.0053953", "998.1069038",     "998.2140192", "998.2655421", "998.308316", "998.3090242",     "998.3579509", "998.3656231", "998.3766007", "998.6844831",     "998.7030027", "998.7112321", "998.8021132", "998.8839799",     "998.9225688", "998.9270228", "998.9337225", "9983.555066",     "9985.353117", "9989.517638", "999.0713699", "999.0771916",     "999.1021413", "999.1779133", "999.2539765", "999.3435971",     "999.3809978", "999.6348707", "999.7597985", "999.8002746",     "999.8819267", "999.8821907", "999.8921074", "999.9211427",     "9991.102816", "9991.440035", "9994.626337", "9994.723654",     "9996.637923", "9998.491819"), class = "factor")), .Names = c("consdentcat2", "sexo", "estrato", "upa", "pesomorcc"), row.names = c(NA, 10L), class = "data.frame")##################################################
bteste1 <-bteste[1:10, ]#bteste1   consdentcat2 sexo estrato     upa   pesomorcc1             2    1 1110011 1100002 418.76819022             2    1 1110011 1100002 317.13175793             2    1 1110011 1100002 467.09452884             1    1 1110011 1100002 209.38409515             2    1 1110011 1100002 209.38409516             2    1 1110011 1100002 418.76819027             2    1 1110011 1100002 233.54726448             2    1 1110011 1100002 628.15228539             2    1 1110011 1100002 317.131757910            2    2 1110011 1100002 321.5014524>                             _________________________________________
Luciane Maria Pilotto



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