[R] question about system.file()

[Rui Barradas]

Hello,

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Hope this helps,

Rui Barradas

Às 04:33 de 11/04/20, Anand Menon escreveu:
> Hello, Could you please help unsubscribe me from these emails. Thank you.
> 
> Kind Regards,
> Anand K Menon
> Cell: 1-416-939-3671
> 
> 
> On Fri, Apr 10, 2020 at 3:46 PM Ana Marija <sokovic.anamarija using gmail.com>
> wrote:
> 
>> Hello,
>>
>> I would like to try this example in this link:
>>
>> https://www.rdocumentation.org/packages/SNPRelate/versions/1.6.4/topics/snpgdsBED2GDS
>>
>> for example this line:
>>
>> bed.fn <- system.file("extdata", "plinkhapmap.bed.gz", package="SNPRelate")
>>
>> I have in current directory from where I would run this function a
>> file named output4.bed
>>
>> in order to run the above, can I just run this:
>> bed.fn <- system.file("output4.bed", package="SNPRelate")
>>
>> what is "extdata" ? Do I need it if my output4.bed is in the directory
>> from where I am running this?
>>
>> Also do I need to have .gz format of output4.bed?
>>
>> Thanks
>> Ana
>>
>> ______________________________________________
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>>
> 
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> 
> ______________________________________________
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> and provide commented, minimal, self-contained, reproducible code.
>