[R] Package renv and Rscript

Ben Tupper btupper @end|ng |rom b|ge|ow@org
Tue Apr 14 19:41:26 CEST 2020


I am using renv (https://rstudio.github.io/renv/) to maintain a project
environment in a directory (ala /path/to/project)

Within the project I have a number of scripts that I call using...

$ Rscript /path/to/script.R /path/to/config_file

I can kick this off successfully with the renv environment when I manually
start Rscript within the project directory. Now I would like to be able to
hand the script kick off to either crontab or the PBS queueing system.

At first I thought I would actually call a wrapper script such that
accepted two arguments '/path/to/script.R' and '/path/to/config_file'. I
planned to use


Ben Tupper
Bigelow Laboratory for Ocean Science
East Boothbay, Maine

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