[R] survival anaylsis with tabulated data

[John Kane]

 http://adv-r.had.co.nz/Reproducibility.html

http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example



On Thu, 21 May 2020 at 09:16, PIKAL Petr <petr.pikal using precheza.cz> wrote:

> Hallo
>
> I am not private consultant so please keep your messages on help list.
>
> From help page I understand that the function survtab_ag needs to have
> **specially prepared** data as input. We could only guess if your data are
> in correct format and most probably they are not.
>
> Without knowing details I wonder if anybody is able to help you.
>
> Cheers
> Petr
>
> From: Ergin Artun <eartun2010 using gmail.com>
> Sent: Thursday, May 21, 2020 3:08 PM
> To: PIKAL Petr <petr.pikal using precheza.cz>
> Subject: Re: [R] survival anaylsis with tabulated data
>
> Dear Pical,
> I'm also not  an expert and had a typo error while translating colum names
> at code.
>
> At my data set time(as day), at.risk(people), from0to1(as people with
> event), from0to0(censored values for the function) are integers, Country,
> and the other two columns are charecter strings.
>
> Best regards...
> Tanju
>
> PIKAL Petr <mailto:petr.pikal using precheza.cz>, 21 May 2020 Per, 12:53
> tarihinde şunu yazdı:
> Hi
>
> I am not an expert and cannot give you canned solution, but here are few
> comments:
>
> Without knowing data structure it is hard to decipher where is the problem.
> So posting result of
> str(yourata) or at least part of it hardly anybody could help.
> Cuntry is typo?
> The error could by result of typo or not properly structured data.
>
> This is plain text mail list, please do not use HTML formating.
>
> Cheers
> Petr
>
> > -----Original Message-----
> > From: R-help <mailto:r-help-bounces using r-project.org> On Behalf Of Ergin
> Artun
> > Sent: Wednesday, May 20, 2020 2:01 PM
> > To: mailto:r-help using r-project.org
> > Subject: [R] survival anaylsis with tabulated data
> >
> >   Dear R Friends,
> >
> > I'm a medical doctor with some knowledge about statistic and programming.
> > I want to analysis and compare data of different countries with survival
> or
> > popEpi tools in R.
> > I couldn't able to make tables with one row for every people of countries
> > without illness. I can made a data table look like as:
> >
> > time
> > country at.risk from0to1 sk zf from0to0
> > 1 AFG 40363639 1 K F 0
> >
> > I try to prepare for analysis with survtab_ag function of Epi package.
> When
> > I run
> > st <- survtab_ag(time ~ cuntry, data = xxxx, surv.type =
> > "surv.obs",surv.breaks=list(xxxx$time),
> > +                  surv.method = "lifetable",
> > +                  d = "from0to1")
> > I see just the error message:
> > Error in http://sort.int(x, na.last = na.last, decreasing = decreasing,
> ...) :
> >   'x' must be atomic
> >
> > Can any body help me for preparing this kind tabulated data without
> surv()
> > to other survival functions?
> > Best regards from Turkey
> >
> > Tanju Aktug
> >
> >       [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > mailto:R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide http://www.R-project.org/posting-
> > guide.html
> > and provide commented, minimal, self-contained, reproducible code.
> ______________________________________________
> R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>


-- 
John Kane
Kingston ON Canada

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