[R] Surprising behavior and bugs in R 4.0.4

[Jiefei Wang]

Hi Miso,

Have you tried to install Seurat from CRAN? What you were using is the
GitHub version of the package and has been actively updating, so the
problem might be from the package.

Best,
Jiefei

On Sat, Mar 20, 2021 at 10:32 PM Miso Na <mna3 using jhu.edu> wrote:

> Dear helpers,
>
> Although I uninstalled and reinstalled R more than 3 times to delete the
> error in api_create, it did not work. The error is representing on the very
> first page on R consol.
> Error: could not find function "api_create"
>
> I guess this error makes impossible to install library 'SCMAP',
> 'SingleCellExperiment' or 'Seurat'.
> For example, I got this error when I tried to install those libraries.
> Installing package into 'C:/Users/user/Documents/R/win-library/4.0'
> (as 'lib' is unspecified)
> Error: could not find function "api_create"
> Execution halted
> Error: Failed to install 'Seurat' from GitHub:
>   (converted from warning) installation of package
> 'C:/Users/user/AppData/Local/Temp/RtmpKYL3Pe/file2c2c6cb0766e/Seurat_4.0.1.tar.gz'
> had non-zero exit status
>
>
> My sessionInfo is here!
>
> > sessionInfo()
> R version 4.0.4 (2021-02-15)
> Platform: x86_64-w64-mingw32/x64 (64-bit)
> Running under: Windows 10 x64 (build 19041)
>
> Matrix products: default
>
> locale:
> [1] LC_COLLATE=English_United States.1252
> [2] LC_CTYPE=English_United States.1252
> [3] LC_MONETARY=English_United States.1252
> [4] LC_NUMERIC=C
> [5] LC_TIME=English_United States.1252
> system code page: 949
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] compiler_4.0.4
>
> Thanks for your help!
>
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>
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