[R] Error in dis[sppInSample,sppInSample]:subscript out of bounds

Bert Gunter bgunter@4567 @end|ng |rom gm@||@com
Mon Nov 1 21:02:03 CET 2021


This question is about an (unspecified! -- tell us which one so we don't
have to guess) contributed package. The Posting Guide linked below says:

"For questions about functions in standard packages distributed with R (see
the FAQ Add-on packages in R
<https://cran.r-project.org/doc/FAQ/R-FAQ.html#Add-on-packages-in-R>), ask
questions on R-help.
If the question relates to a *contributed package* , e.g., one downloaded
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Bert Gunter

"The trouble with having an open mind is that people keep coming along and
sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )


On Mon, Nov 1, 2021 at 12:49 PM Zhao Shanshan <sszhao19 using outlook.com> wrote:

> Hi, I have the same problem, can you tell me how to solve it?
>
>
>
>
>
> Hello,
>
> I am new to R and am encountering an error message that I cannot find a
> solution for.
>
> I am attempting to calculate MPD (mean pairwise distance), without
> weighting for abundance, with a community species list and a phylogenetic
> tree in newick format with branch lengths.
>
> I have read in both list and tree .txt files and calculated PD without any
> problem.
>
> To calculate MPD I have entered:>MPD1=mpd(list,cophenetic(tree))
>
> Error:Error in dis[sppInSample, sppInSample] : subscript out of bounds
>
> Thank you for you helpCheersMarion.
>
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