[R] [External] add equation and rsqared to plot
Bill Dunlap
w||||@mwdun|@p @end|ng |rom gm@||@com
Fri Apr 8 18:49:28 CEST 2022
#this is OK
ex1 <- expression(" first: {f * minute}(x) " == {f * minute}(x))
ex2 <- expression(" second: {f * second}(x) " == {f *
second}(x))
text(1, 9.6, ex1, adj=0)
text(1, 9.0, ex2, adj=0)
#and this is not
text(2, 8, expression(atop(ex1, ex2)))
text(2, 7, substitute( atop(ex1, ex2), list(ex1=ex1,ex2=ex2)))
Plotmath does not like 'expression' objects inside of the expressions or
calls that you pass it. You would be better off using quote() instead of
expression(), or at least learning how they differ.
plot(1:10)
q1 <- quote(" first: {f * minute}(x) "=={f * minute}(x))
q2 <- quote("second: {f * second}(x) "=={f * second}(x))
text(1, 9.6, q1, adj=0)
text(1, 9.0, q2, adj=0)
# text(2, 8, expression(atop(q1, q2))) # quote() or expression(), this will
not look up values of ex1 or ex2
text(6, 3, substitute( atop(q1, q2), list(q1=q1,q2=q2)))
Looking at the output of substitute directly may help you understand the
difference between quote and expression. expression(...) produces a
list-like object containing any number of language objects and quote(...)
produces a single language object.
> e <- expression(x^2)
> q <- quote(x^2)
> substitute(sin(e), list(e=e))
sin(expression(x^2))
> substitute(sin(q), list(q=q))
sin(x^2)
-Bill
On Fri, Apr 8, 2022 at 7:42 AM PIKAL Petr <petr.pikal using precheza.cz> wrote:
> Hallo David
>
> Fair enough. Thanks for your explanation, which told me what should be
> done. It works perfectly for my example but I am still confused how to get
> expressions given to atop (or other functions) be evaluated and help page
> does not enlighten me, so I am still puzzled.
>
> When I borrow example from help,
>
> plot(1:10, type="n", xlab="", ylab="", main = "plot math & numbers")
> theta <- 1.23 ; mtext(bquote(hat(theta) == .(theta)), line= .25)
> for(i in 2:9)
> text(i, i+1, substitute(list(xi, eta) == group("(",list(x,y),")"),
> list(x = i, y = i+1)))
>
> #this is OK
> ex1 <- expression(" first: {f * minute}(x) " == {f * minute}(x))
> ex2 <- expression(" second: {f * second}(x) " == {f *
> second}(x))
> text(1, 9.6, ex1, adj=0)
> text(1, 9.0, ex2, adj=0)
>
> #and this is not
> text(2, 8, expression(atop(ex1, ex2)))
> text(2, 7, substitute( atop(ex1, ex2), list(ex1=ex1,ex2=ex2)))
>
> #and this works
> text(2, 6, expression(atop(1,2)))
>
> I tried to use eval when calling atop, but it did not work either.
> Therefore some hint in help page could be quite handy.
>
> Best regards
> Petr Pikal
>
> S pozdravem | Best Regards
> RNDr. Petr PIKAL
> Vedoucí Výzkumu a vývoje | Research Manager
> PRECHEZA a.s.
> nábř. Dr. Edvarda Beneše 1170/24 | 750 02 Přerov | Czech Republic
> Tel: +420 581 252 256 | GSM: +420 724 008 364
> petr.pikal using precheza.cz | www.precheza.cz
>
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> -----Original Message-----
> From: David Winsemius <dwinsemius using comcast.net>
> Sent: Thursday, April 7, 2022 12:04 AM
> To: PIKAL Petr <petr.pikal using precheza.cz>; Richard M. Heiberger <
> rmh using temple.edu>
> Cc: r-help using r-project.org
> Subject: Re: [R] [External] add equation and rsqared to plot
>
>
> On 4/6/22 14:36, PIKAL Petr wrote:
> > Hallo David
> >
> > Thanks for your answer. atop itself somehow cannot use expression made
> by substitute although those expressions itself are correct. I asked this
> question after roughly two hours of unsuccessful atempts.
> >
> > The second substitute or bquote solves the problem. Maybe this could
> propagate to help page, because although atop works smoothly with simple
> expressions, expressions with substitute are treated in a wrong way (at
> least by my opinion).
>
>
> It's not a problem with `atop`. It's a problem with your understanding of
> how R expressions and plotmath functions work. The argument(s) to
> `expression` are not evaluated. So `atop` was given two expressions `eq`
> and `req` and they in turn were not evaluated .... just taken as text
> values inside atop. Using either `substitute` (with a second argument
> list) or bquote (with its special dot function) forces evaluation by
> getting from the R symbol table those expressions which you had assigned as
> values of the symbols `eq` and `req`.
>
> The plotmath functions (not just atop but also `paste`, `frac`, `over` and
> all the rest on the ?plotmath pafge), are designed to be "like"
> `expression` in not evaluating their arguments unless a "special value"
> like a Greek letter name or a defined %<op>% is found. Those functions are
> handled with a different parser than regular R functions. So they are not
> designed to go out to the R symbol table (which is where even locally
> defined object names are kept) to find values.
>
>
> Hope this helps;
>
> David.
>
>
> --
>
> David.
>
> >
> > Thanks again.
> >
> > Best regards.
> > Petr
> >
> >
> > ________________________________________
> > Od: David Winsemius <dwinsemius using comcast.net>
> > Odesláno: 6. dubna 2022 23:20
> > Komu: PIKAL Petr; Richard M. Heiberger
> > Kopie: r-help using r-project.org
> > Předmět: Re: [R] [External] add equation and rsqared to plot
> >
> > Try this:
> >
> >
> > lm_eqn = function(m) {
> > l <- list(a = format(coef(m)[1], digits = 4),
> > b = format(abs(coef(m)[2]), digits = 4),
> > r2 = format(summary(m)$r.squared, digits = 3),
> > r2adj = format(summary(m)$adj.r.squared, digits = 3));
> > if (coef(m)[2] >= 0) {
> > eq <- substitute(italic(y) == a + b %.% italic(x), l)
> > } else {
> > eq <- substitute(italic(y) == a - b %.% italic(x),l)
> >
> > }
> > req <- substitute(italic(r)^2~"="~r2*
> ","~~italic(adj.r)^2~"="~r2adj,l)
> > a_regs <- substitute( atop(eq, req), list(eq=eq,req=req)) }
> >
> > --
> >
> > David.
> >
> > On 4/6/22 13:47, PIKAL Petr wrote:
> >> Hallo Richard.
> >>
> >> Did you try the example? I Used atop but with the syntax I made, the
> >> result is
> >>
> >> eq
> >> req
> >>
> >> but not the equations.
> >>
> >> I send the picture, but I am not sure if it will go through.
> >>
> >> Best regards
> >> Petr
> >>
> >> ________________________________________
> >> Od: Richard M. Heiberger <rmh using temple.edu>
> >> Odesláno: 6. dubna 2022 22:36
> >> Komu: PIKAL Petr
> >> Kopie: r-help using r-project.org
> >> Předmět: Re: [External] [R] add equation and rsqared to plot
> >>
> >> I think you are looking for atop(a,b) See ? plotmath
> >>
> >>> On Apr 06, 2022, at 15:58, PIKAL Petr <petr.pikal using precheza.cz> wrote:
> >>>
> >>> Dear all
> >>>
> >>>
> >>> I want to add equation and rsquared values to plot and I am lost in
> correct expression form. I want to have 2 lines, one with equation and one
> with r squared values.
> >>>
> >>>
> >>> Here is what I made.
> >>>
> >>> # function to extract values from lm fit.
> >>>
> >>>
> >>> lm_eqn = function(m) {
> >>> l <- list(a = format(coef(m)[1], digits = 4),
> >>> b = format(abs(coef(m)[2]), digits = 4),
> >>> r2 = format(summary(m)$r.squared, digits = 3),
> >>> r2adj = format(summary(m)$adj.r.squared, digits = 3));
> >>> if (coef(m)[2] >= 0) {
> >>> eq <- substitute(italic(y) == a + b %.% italic(x), l)
> >>> } else {
> >>> eq <- substitute(italic(y) == a - b %.% italic(x),l)
> >>>
> >>> }
> >>> req <- substitute(italic(r)^2~"="~r2*
> ","~~italic(adj.r)^2~"="~r2adj,l)
> >>> expression(atop(eq, req))
> >>> }
> >>>
> >>>
> >>> #Example
> >>>
> >>> x <- 1:10
> >>> y <- x*5 +rnorm(10)
> >>> plot(x,y)
> >>> fit <- lm(y~x)
> >>> text(4,40, lm_eqn(fit))
> >>>
> >>>
> >>> I know that both eq and req are correct expressions and when the last
> line in function is either eq or req, the example gives correct result.
> >>>
> >>>
> >>> But how to get both expressions one above the other is mystery.
> >>>
> >>> Please help.
> >>>
> >>>
> >>> Best regards.
> >>>
> >>> Petr
> >>>
> >>>
> >>>
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> >> Osobní údaje: Informace o zpracování a ochraně osobních údajů
> >> obchodních partnerů PRECHEZA a.s. jsou zveřejněny na:
> >> https://www.precheza.cz/zasady-ochrany-osobnich-udaju/ | Information
> >> about processing and protection of business partner’s personal data
> >> are available on website:
> >> https://www.precheza.cz/en/personal-data-protection-principles/
> >> Důvěrnost: Tento e-mail a jakékoliv k němu připojené dokumenty jsou
> >> důvěrné a podléhají tomuto právně závaznému prohláąení o vyloučení
> >> odpovědnosti: https://www.precheza.cz/01-dovetek/ | This email and
> >> any documents attached to it may be confidential and are subject to
> >> the legally binding disclaimer:
> >> https://www.precheza.cz/en/01-disclaimer/
> >>
> >>
> >> ______________________________________________
> >> R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
> >> https://stat.ethz.ch/mailman/listinfo/r-help
> >> PLEASE do read the posting guide
> >> http://www.R-project.org/posting-guide.html
> >> and provide commented, minimal, self-contained, reproducible code.
> ______________________________________________
> R-help using r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
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