[R] Problem installing Rcmdr on version 4.1.2...

Brian Lunergan ||809 @end|ng |rom nc|@c@
Fri Mar 4 14:23:43 CET 2022


Hi folks:

Running R 4.1.2 on Linux Mint 19.3. Tried to install Rcmdr, but when it
tried to install nloptr I got the following as it seemed to trip over
Cmake. Bit lengthy but here's what was spit out.

* installing *source* package ‘nloptr’ ...
** package ‘nloptr’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++14 accepts -g... yes
checking how to run the C++ preprocessor... g++ -std=gnu++14 -E
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ -std=gnu++14 accepts -g... (cached) yes
checking for pkg-config... /usr/bin/pkg-config
checking if pkg-config knows NLopt... no
using NLopt via local cmake build on x86_64
set CMAKE_BIN=/usr/bin/cmake
set CC=gcc -std=gnu99 -std=gnu11
set CFLAGS= -fpic -g -O2
-fdebug-prefix-map=/build/r-base-J7pprH/r-base-4.1.2=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g
set CXX=g++
set CXXFLAGS=-std=gnu++11 -fpic -g -O2
-fdebug-prefix-map=/build/r-base-J7pprH/r-base-4.1.2=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g
set LDFLAGS=-Wl,-Bsymbolic-functions -Wl,-z,relro
CMake Error: The source directory
"/tmp/RtmpP4rvt0/R.INSTALL360c3be2694c/nloptr/src/nlopt-build" does not
exist.
Specify --help for usage, or press the help button on the CMake GUI.
Unknown argument -j
Unknown argument 2
Usage: cmake --build <dir> [options] [-- [native-options]]
Options:
  <dir>          = Project binary directory to be built.
  --target <tgt> = Build <tgt> instead of default targets.
                   May only be specified once.
  --config <cfg> = For multi-configuration tools, choose <cfg>.
  --clean-first  = Build target 'clean' first, then build.
                   (To clean only, use --target 'clean'.)
  --use-stderr   = Ignored.  Behavior is default in CMake >= 3.0.
  --             = Pass remaining options to the native tool.
CMake Error: The source directory
"/tmp/RtmpP4rvt0/R.INSTALL360c3be2694c/nloptr/src/nlopt" does not exist.
Specify --help for usage, or press the help button on the CMake GUI.
cp: cannot stat 'nlopt/include/*': No such file or directory
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG
-I../inst/include
-I'/home/brian/R/x86_64-pc-linux-gnu-library/4.1/testthat/include'
-fpic  -g -O2 -fdebug-prefix-map=/build/r-base-J7pprH/r-base-4.1.2=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g  -c init_nloptr.c -o init_nloptr.o
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG
-I../inst/include
-I'/home/brian/R/x86_64-pc-linux-gnu-library/4.1/testthat/include'
-fpic  -g -O2 -fdebug-prefix-map=/build/r-base-J7pprH/r-base-4.1.2=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g  -c nloptr.c -o nloptr.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include
-I'/home/brian/R/x86_64-pc-linux-gnu-library/4.1/testthat/include'
-fpic  -g -O2 -fdebug-prefix-map=/build/r-base-J7pprH/r-base-4.1.2=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g  -c test-C-API.cpp -o test-C-API.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I../inst/include
-I'/home/brian/R/x86_64-pc-linux-gnu-library/4.1/testthat/include'
-fpic  -g -O2 -fdebug-prefix-map=/build/r-base-J7pprH/r-base-4.1.2=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g  -c test-runner.cpp -o test-runner.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions
-Wl,-z,relro -o nloptr.so init_nloptr.o nloptr.o test-C-API.o
test-runner.o -llapack -lblas -lgfortran -lm -lquadmath -Lnlopt/lib
-lnlopt -L/usr/lib/R/lib -lR
/usr/bin/ld: cannot find -lnlopt
collect2: error: ld returned 1 exit status
/usr/share/R/share/make/shlib.mk:10: recipe for target 'nloptr.so' failed
make: *** [nloptr.so] Error 1
ERROR: compilation failed for package ‘nloptr’
* removing ‘/home/brian/R/x86_64-pc-linux-gnu-library/4.1/nloptr’

I have cmake on mint in the current edition, but when I try to install
it in R it fires as not available for 4.1.2. Is there a version out
there that will work with 4.1.2? Where would I find it and how would I
install it? Any help/advice would be greatly appreciated.

Regards...
-- 
Brian Lunergan
Russell, ON
Canada

-------------- next part --------------
A non-text attachment was scrubbed...
Name: OpenPGP_signature
Type: application/pgp-signature
Size: 665 bytes
Desc: OpenPGP digital signature
URL: <https://stat.ethz.ch/pipermail/r-help/attachments/20220304/bb0ed18a/attachment.sig>


More information about the R-help mailing list