[R] problem installing RGBL library

[Eric Berger]

looks fine.
what's the problem?

On Sat, Apr 22, 2023 at 7:27 PM varin sacha <varinsacha using yahoo.fr> wrote:

> Eric,
>
> Here it is :
>
>
> library(RBGL)
> Loading required package: graph
> Loading required package: BiocGenerics
>
> Attaching package: ‘BiocGenerics’
>
> The following objects are masked from ‘package:igraph’:
>
>   normalize, path, union
>
> The following objects are masked from ‘package:stats’:
>
>   IQR, mad, sd, var, xtabs
>
> The following objects are masked from ‘package:base’:
>
>   anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames,
> dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep, grepl,
> intersect, is.unsorted, lapply, Map,
>   mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
> Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, table,
> tapply, union, unique, unsplit, which.max,
>   which.min
>
>
> Attaching package: ‘graph’
>
> The following objects are masked from ‘package:igraph’:
>
>   degree, edges, intersection
>
>
> Attaching package: ‘RBGL’
>
> The following objects are masked from ‘package:igraph’:
>
>   bfs, dfs, transitivity
>
>
>
>
>
>
>
>
>
>
> Le samedi 22 avril 2023 à 18:12:56 UTC+2, Eric Berger <
> ericjberger using gmail.com> a écrit :
>
>
>
>
>
> What happens with the command
> > library(RBGL)
>
>
>
> On Sat, Apr 22, 2023 at 7:08 PM varin sacha via R-help <
> r-help using r-project.org> wrote:
> > Dear R-experts,
> >
> > How to solve that problem?
> >
> > My R version is 4.2.1
> >
> > Here below trying to install RGBL library found here :
> https://bioconductor.org/packages/release/bioc/html/RBGL.html
> >
> > So, I run this R code :
> >
> > if (!require("BiocManager", quietly = TRUE))
> >     install.packages("BiocManager")
> >
> > BiocManager::install("RBGL")
> >
> >
> > Here is what I get :
> >
> >> if (!require("BiocManager", quietly = TRUE))
> > + install.packages("BiocManager")
> > Bioconductor version 3.16 (BiocManager 1.30.20), R 4.2.1 (2022-06-23)
> >>
> >> BiocManager::install("RBGL")
> > Bioconductor version 3.16 (BiocManager 1.30.20), R 4.2.1 (2022-06-23)
> > Warning message:
> > package(s) not installed when version(s) same as or greater than
> current; use `force = TRUE` to re-install: 'RBGL'
> >
> > ______________________________________________
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> > and provide commented, minimal, self-contained, reproducible code.
> >
>
>

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