[R] MLE Estimation of Gamma Distribution Parameters for data with 'zeros'

Jeff Newmiller jdnewm|| @end|ng |rom dcn@d@v|@@c@@u@
Thu Jan 19 16:14:48 CET 2023


Beware of adding a constant... the magnitude of the constant used can have an outsized impact on the answer obtained. See e.g. https://gist.github.com/jdnewmil/99301a88de702ad2fcbaef33326b08b4

On January 19, 2023 3:49:29 AM PST, peter dalgaard <pdalgd using gmail.com> wrote:
>Not necessarily homework, Bert. There's a generic issue with MLE and rounded data, in that gamma densities may be 0 at the boundary but small numbers are represented as 0, making the log-likelihood -Inf. 
>
>The cleanest way out is to switch to a discretized distribution in the likelihood, so that instead of log(dgamma(0,...)) you use log(pgamma(.005,..) - pgamma(0,...)) == pgamma(.005,..., log=TRUE). (For data rounded to nearest .01, that is). Cruder techniques would be to just add, like, .0025 to all the zeros. 
>
>-pd
>
>> On 10 Jan 2023, at 18:42 , Bert Gunter <bgunter.4567 using gmail.com> wrote:
>> 
>> Is this homework? This list has a no-homework policy.
>> 
>> 
>> -- Bert
>> 
>> On Tue, Jan 10, 2023 at 8:13 AM Nyasha <kahuninyasha13296 using gmail.com> wrote:
>>> 
>>> Please how can one go about this one? I don't know how to go about it.
>>> 
>>>        [[alternative HTML version deleted]]
>>> 
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>> ______________________________________________
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>> and provide commented, minimal, self-contained, reproducible code.
>

-- 
Sent from my phone. Please excuse my brevity.



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