[BioC] AnnBuilder failing Taffy examples

Thu, 18 Jul 2002 15:59:48 -0400

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I have been working on getting AnnBuilder functional without much
success. I have a postgresql db running on the system (linux), I have
created a devDB. And ABRnwCheck("devDB") exits without errors.
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But, ... as I work through the Taffy example in the docs I receive the
following error with acc2LLMapper:
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Error in "names<-.default"(*tmp*, value =3D c(byID, id)):
Names attribute must be the same length as the vector
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=20
Any ideas?
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Thanks
=20
Barry
=20
=20
=20
=20
Barry S. Henderson, Ph.D.
Senior Scientist
Ribonomics, Inc.
barry.henderson@ribonomics.com
 =20
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 <http://www.ribonomics.com/>=20
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<div class=3DSection1>

I have been working on getting AnnBuilder
functional without much success.&nbsp; =
I
have a postgresql db running on the system =
(linux), I have created a devDB. And
ABRnwCheck(&#8220;devDB&#8221;) exits without =
errors.<o:p></o:p>

<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>

<p class=3DMsoNormal><span class=3DGramE><font size=3D2 =
face=3DArial><span
style=3D'font-size:10.0pt;font-family:Arial'>But, =
&#8230;</span></font></span><font
size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;font-family:Arial'> as I work
through the Taffy example in the docs I receive the following error with
acc2LLMapper:<o:p></o:p></span></font></p>

<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>

<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>

<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>Error in &#8220;names&lt;-.default<span =
class=3DGramE>&#8221;(</span>*<span
class=3DSpellE>tmp</span>*, value =3D c(<span =
class=3DSpellE>byID</span>, id)):<o:p></o:p></span></font></p>

<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>Names attribute must be the same length as the =
vector<o:p></o:p></span></font></p>

<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>

<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>

<p class=3DMsoNormal><span class=3DGramE><font size=3D2 =
face=3DArial><span
style=3D'font-size:10.0pt;font-family:Arial'>Any =
ideas?</span></font></span><font
size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;font-family:Arial'><o:p></o:p></span></font></p=
>

<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>

<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>Thanks<o:p></o:p></span></font></p>

<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>

<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>Barry<o:p></o:p></span></font></p>

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font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>

<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>

<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>

<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>

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  column;mso-height-rule:exactly'><strong><b><font size=3D3 =
face=3D"Times New Roman"><span
  style=3D'font-size:12.0pt;mso-no-proof:yes'>Barry S. Henderson, =
Ph.D.</span></font></b></strong><font
  size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;font-family:Arial;mso-no-proof:
  yes'><br>
  <i><span style=3D'font-style:italic'>Senior Scientist<br>
  Ribonomics, Inc.<br>
  <a =
href=3D"mailto:barry.henderson@ribonomics.com">barry.henderson@ribonomics=
.com</a></span></i></span></font><span
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n;
  mso-height-rule:exactly'><font size=3D3 face=3D"Times New Roman"><span
  style=3D'font-size:12.0pt;mso-no-proof:yes'><a =
href=3D"http://www.ribonomics.com/"><span
  style=3D'text-decoration:none;text-underline:none'><img border=3D0 =
width=3D500
  height=3D78 id=3D"_x0000_i1025" =
src=3D"cid:image001.gif@01C22E74.24A71950"
  alt=3D"Ribonomics: Innovative Functional =
Genomics"></span></a><o:p></o:p></span></font></p>
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