[BioC] AnnBuilder failing Taffy examples

[Robert Gentleman]

On Thu, Jul 18, 2002 at 03:59:48PM -0400, Barry Henderson wrote:
> I have been working on getting AnnBuilder functional without much
> success.  I have a postgresql db running on the system (linux), I have
> created a devDB. And ABRnwCheck("devDB") exits without errors.
>  
> But, ... as I work through the Taffy example in the docs I receive the
> following error with acc2LLMapper:
>  
>  
> Error in "names<-.default"(*tmp*, value = c(byID, id)):
> Names attribute must be the same length as the vector
>  
  Can you run traceback() at this point so we can see where you are?
  Also, once you locate that point, you can put in a call to browser
  (or use debug on the innermost function), this will let you step
  through the code one line at a time. you can query different objects
  and hopefully we can find out what the problem is.

  Also, you didn't say, but what version of R and what version of
  postgres?

  thanks,
    Robert



>  
> Any ideas?
>  
> Thanks
>  
> Barry
>  
>  
>  
>  
> Barry S. Henderson, Ph.D.
> Senior Scientist
> Ribonomics, Inc.
> barry.henderson@ribonomics.com
>   
>  
>   <http://www.ribonomics.com/> 
>  
>  
>  



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| Robert Gentleman                 phone : (617) 632-5250                   |
| Associate Professor              fax:   (617)  632-2444                   |
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