[BioC] missing GO identifier in hgu133a GO

Ken Stickler kestickler@attbi.com
Mon, 28 Oct 2002 16:05:38 -0500


Hi John,

are there notes somewhere on how the annotations were built? Maybe i could try repeating it for hgu133b. Also interested in the mouse chips.
Thanks.

John Zhang wrote:
> 
> Thank you for reporting the error! I will have a look to find out what might
> have been wrong. We do not have the annotation for hgu133b chip yet but will try
> to includ it in the future.
> 
> >From: Ken Stickler <kestickler@attbi.com>
> >To: bioconductor@stat.math.ethz.ch
> >X-Priority: 3 (Normal)
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> >Subject: [BioC] missing GO identifier in hgu133a GO
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> >Date: Fri, 25 Oct 2002 12:27:53 -0400
> >
> >Hi,
> >
> >there is a missing GO id in hgu133a GO.xml
> >
> ><AnnBuilder:Entry id="" describ = "Gene Ontology identifier">
> >       <AnnBuilder:Item name="GO2AFFY" value="203787_at"/>
> >       <AnnBuilder:Item name="GO2AFFY" value="210829_s_at"/>
> >       <AnnBuilder:Item name="GO2AFFY" value="206134_at"/>
> >       <AnnBuilder:Item name="GO2AFFY" value="208828_at"/>
> >       <AnnBuilder:Item name="GO2AFFY" value="218527_at"/>
> >       <AnnBuilder:Item name="GO2ALLAFFY" value="203787_at"/>
> >       <AnnBuilder:Item name="GO2ALLAFFY" value="210829_s_at"/>
> >       <AnnBuilder:Item name="GO2ALLAFFY" value="206134_at"/>
> >       <AnnBuilder:Item name="GO2ALLAFFY" value="208828_at"/>
> >       <AnnBuilder:Item name="GO2ALLAFFY" value="218527_at"/>
> >       <AnnBuilder:Item name="AFFYCOUNTS" value="5"/>
> ></AnnBuilder:Entry>
> >
> >
> >Also, is the GO file available for the hgu133b chip?
> >
> >Thanks,
> >
> >ken
> >
> >
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