[BioC] missing GO identifier in hgu133a GO

[Robert Gentleman]

Hi Ken,
  All the data packages are built with AnnBuilder (available with
  documentation from Bioconductor).
   Robert

On Mon, Oct 28, 2002 at 04:05:38PM -0500, Ken Stickler wrote:
> Hi John,
> 
> are there notes somewhere on how the annotations were built? Maybe i could try repeating it for hgu133b. Also interested in the mouse chips.
> Thanks.
> 
> John Zhang wrote:
> > 
> > Thank you for reporting the error! I will have a look to find out what might
> > have been wrong. We do not have the annotation for hgu133b chip yet but will try
> > to includ it in the future.
> > 
> > >From: Ken Stickler <kestickler@attbi.com>
> > >To: bioconductor@stat.math.ethz.ch
> > >X-Priority: 3 (Normal)
> > >MIME-Version: 1.0
> > >Subject: [BioC] missing GO identifier in hgu133a GO
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> > >Date: Fri, 25 Oct 2002 12:27:53 -0400
> > >
> > >Hi,
> > >
> > >there is a missing GO id in hgu133a GO.xml
> > >
> > ><AnnBuilder:Entry id="" describ = "Gene Ontology identifier">
> > >       <AnnBuilder:Item name="GO2AFFY" value="203787_at"/>
> > >       <AnnBuilder:Item name="GO2AFFY" value="210829_s_at"/>
> > >       <AnnBuilder:Item name="GO2AFFY" value="206134_at"/>
> > >       <AnnBuilder:Item name="GO2AFFY" value="208828_at"/>
> > >       <AnnBuilder:Item name="GO2AFFY" value="218527_at"/>
> > >       <AnnBuilder:Item name="GO2ALLAFFY" value="203787_at"/>
> > >       <AnnBuilder:Item name="GO2ALLAFFY" value="210829_s_at"/>
> > >       <AnnBuilder:Item name="GO2ALLAFFY" value="206134_at"/>
> > >       <AnnBuilder:Item name="GO2ALLAFFY" value="208828_at"/>
> > >       <AnnBuilder:Item name="GO2ALLAFFY" value="218527_at"/>
> > >       <AnnBuilder:Item name="AFFYCOUNTS" value="5"/>
> > ></AnnBuilder:Entry>
> > >
> > >
> > >Also, is the GO file available for the hgu133b chip?
> > >
> > >Thanks,
> > >
> > >ken
> > >
> > >
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> 
> 
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-- 
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| Robert Gentleman                 phone : (617) 632-5250                   |
| Associate Professor              fax:   (617)  632-2444                   |
| Department of Biostatistics      office: M1B20
| Harvard School of Public Health  email: rgentlem@jimmy.dfci.harvard.edu   |
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