[BioC] MAC INSTALLATION AFFY PACKAGE
Stirewalt, Derek L
dstirewa at fhcrc.org
Mon Apr 28 15:00:37 MEST 2003
HI,
WE ARE TRYING TO INSTALL AFFY PACKAGE AND BIOC ON A IMAC WITH OS10 AND WHEN
WE TRY TO READ A CEL FILE HERE IS WHAT WE GET:
> library(affy)
Welcome to Bioconductor
To view some introductory material -- look at our vignettes
Simply type: openVignette()
to see the available vignettes
To read a vignette see the openVignette help page for details
Creating a new generic function for "summary" in package
Biobase
Attaching package `Biobase':
The following object(s) are masked from package:base :
split summary
Attaching package `affy':
The following object(s) are masked from package:base :
barplot boxplot colnames hist history image ncol nrow
> Data <- ReadAffy()
Error in getInfoInAffyFile(filename, "CEL", "HEADER", "DatHeader", compress =
compress) :
Cannot open the file Wilson:Applications:rm162::0126192.CEL.
SO IT SEEMS THAT BIOC IS ABLE TO GET AFFY WORKING BUT READNG THE CEL FILE
SEEMS T BE A TROUBLE. WE ARE RUNNING BIOC on R1.6.2 and the Affy package is
the routine one, not the developmental package.
ANY HELP WELCOME ! THANKS
Derek L. Stirewalt, MD
Associate in Clinical Research
D4-100, FHCRC
1100 Fairview Ave N
Seattle, WA 98109
(206)-667-5113
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