[BioC] Simple questions about p values adjustment in limma/multt est

Yuk Fai Leung YFLeung at cgr.harvard.edu
Thu Aug 21 13:54:15 MEST 2003


Is the FDR assumed to be a certain percent (e.g. 5%) in the FDR adjustment
for p values? If so, is it possible to change it? Are these FDR adjusted
p-values the same as/similar to q-values in SAM procedure?

Thanks in advance!

Best regards,
Yuk Fai Leung
Bauer Center for Genomics Research
Harvard University
7 Divinity Avenue
Cambridge, MA 02138
Tel: 617-496-7134
Fax: 617-495-2196
email: yfleung at cgr.harvard.edu; yfleung at genomicshome.com
URL: http://genomicshome.com

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