[BioC] Limma parameters

Stephen Henderson s.henderson at ucl.ac.uk
Mon Dec 8 14:49:00 MET 2003

 I've been examining the eBayes function in Limma using some affymetrix data
we have. The default proportion setting: 0.01 I think is probably wrong for
the comparison of tissue groups I have.

Is there a rational way to estimate/guesstimate the correct proportion? Or
isn't that the point anyway?


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