[BioC] Affymetrix CDF Packages
Thu, 27 Feb 2003 08:59:31 -0800
I have a question regarding the Affymetrix CDF Packages for BioConductor.
We have installed BioConductor using the getBioC.R script on a Linux server
and it seems to work fine. Regarding the Affymetrix CDF Packages we are a
little bit lost where to place these files/directories after unpacking
(gunzip & tar). After the command "R> eset <- rma(Data)" the software looks
for a *cdf.rda file in /usr/lib/R/library/affy/data. When I take a *cdf.rda
file from an unpacked Affymetrix CDF Package and place it in this requested
directory then the software seems to generate data without error messages.
However, since this is only one file of the CDF package, where are the
remaining files and directories of an CDF package supposed to go?
Thanks for your help,
Center for Plant Cell Biology (CEPCEB)
Department of Botany and Plant Sciences
University of California
Riverside, CA 92521