[BioC] Recent changes to Bioconductor packages

[madman at jimmy.harvard.edu]

This is an automated message sent out weekly to report recent changes
to Bioconductor packages.  Please see the URL 
http://www.bioconductor.org/changelog.html for a complete history of 
changes.  Unless otherwise noted, these changes apply to the developmental
packages only.
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5 July 2003: limma - imported version 1.1.7
     - support for much extra structure in RGList and MAList objects
	 - representation of MArrayLM class reverts to list
	 - support for marrayNorm and exprSet objects by lmFit
	 - new function makeContrasts to construct contrast matrices
	 - new function duplicateCorrelation
	 - classifyTests now supports MArrayLM objects
	 - new function classifyTests43 for simple t-stat thresholding
	 - new functions vennCounts and vennDiagram for Venn diagram plots
	 - update of LinearModels documentation to reflect changes

29 June 2003: limma - imported version 1.1.5 - subsetting methods for
     RGList and MAList objects.  Bug fix for cbind method for RGLists.