July 2003 Archives by date

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Starting: Tue Jul 1 05:06:53 MET 2003
Ending: Thu Jul 31 23:31:13 MET 2003
Messages: 197

• [BioC] affy vs rma   Laurent Gautier
• [BioC] Re: offer from I Neuhaus to create a BMS response; keep in core, please   Todd Richmond
• [BioC] Re: offer from I Neuhaus to create a BMS response; keep in core, please   Rafael A. Irizarry
• [BioC] Re: offer from I Neuhaus to create a BMS response; kee p in core, please   Warnes, Gregory R
• [BioC] Re: offer from I Neuhaus to create a BMS response; keep in core, please   Todd Richmond
• [BioC] Re: offer from I Neuhaus to create a BMS response; keep in core, please   Isaac Neuhaus
• [BioC] MAS 5 with control genes?   osman at mit.edu
• [BioC] (no subject)   osman at mit.edu
• [BioC] from CHP files to txt or xls files   Antille,Nicolas,LAUSANNE,NRC-BAS
• [BioC] Re: offer from I Neuhaus to create a BMS response; keep incore, please   Park, Richard
• [BioC] looking for a course in statistics   De Rinaldis, Emanuele
• [BioC] Re: affy package problem   Simon Cawley
• [BioC] Slow responses for the rest of this week   Jeff Gentry
• [BioC] normalization and analysis of connected designs   Ramon Diaz
• [BioC] memory bottleneck on Linux   Tapan Mehta
• [BioC] how to generate dataset for multtest?   yhuang4 at memphis.edu
• [BioC] memory bottleneck on Linux   A.J. Rossini
• [BioC] Re: documentation for Limma   Gordon Smyth
• [BioC] normalization and analysis of connected designs   Gordon Smyth
• [BioC] normalization and analysis of connected designs   Ramon Diaz-Uriarte
• [BioC] Re: documentation for Limma   Ramon Diaz-Uriarte
• [BioC] Multiple plots   James MacDonald
• [BioC] memory bottleneck on Linux   Tapan Mehta
• [BioC] se.exprs.pdf   Mary Putt
• [BioC] Help with "Error in Summary.factor(..., na.rm = na.rm) : "max" not meaningful for factors", please?   Fátima Núñez
• [BioC] Thanks   Fátima Núñez
• [BioC] Help with "Error in Summary.factor(..., na.rm = na.rm) : "max" not meaningful for factors", please?   Ramon Diaz-Uriarte
• [BioC] normalization and analysis of connected designs   w.huber at dkfz-heidelberg.de
• [BioC] annaffy 0.9 Release   Colin A. Smith
• [BioC] Multiple plots   kfbargad at lg.ehu.es
• [BioC] normalization and analysis of connected designs   Ramon Diaz-Uriarte
• [BioC] normalization and analysis of connected designs   Xavier Solé
• [BioC] normalization and analysis of connected designs   w.huber at dkfz-heidelberg.de
• [BioC] memory bottleneck on Linux   Ben Bolstad
• [BioC] Multiple plots   Gordon Smyth
• [BioC] Biocore response to Affymetrix data format changes   Kulp, David
• [BioC] Multiple plots   kfbargad at lg.ehu.es
• [BioC] normalization and analysis of connected designs   Gordon Smyth
• [BioC] normalization and analysis of connected designs   Ramon Diaz-Uriarte
• [BioC] normalization and analysis of connected designs   Ramon Diaz-Uriarte
• [BioC] normalization and analysis of connected designs   Ramon Diaz-Uriarte
• [BioC] normalization and analysis of connected designs   Xavier Solé
• [BioC] Affy Win32 devel package   James MacDonald
• [BioC] normalization and analysis of connected designs   Gordon Smyth
• [BioC] memory bottleneck on Linux   Tapan Mehta
• [BioC] memory bottleneck on Linux   Rafael A. Irizarry
• [BioC] Specifying Sample Names in ReadAffy;   Paul Boutros
• [BioC] memory bottleneck on Linux   Tapan Mehta
• [BioC] RE: Specifying Sample Names in ReadAffy (Correction)   Paul Boutros
• [BioC] Specifying Sample Names in ReadAffy;   Rafael A. Irizarry
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] Specifying Sample Names in ReadAffy;   James MacDonald
• [BioC] Re: Specifying Sample Names in ReadAffy; (Fixed)   Paul Boutros
• [BioC] se.exprs   Mary Putt
• [BioC] se.exprs   Rafael A. Irizarry
• [BioC] SMD Raw Data -> marrayRaw Import   Colin A. Smith
• [BioC] expresso and mas5 scaling   johnston at pat.biochem.ucl.ac.uk
• [BioC] Heatmap ordering   Hinnerk Boriss
• [BioC] SMD Raw Data -> marrayRaw Import   Jean Yee Hwa Yang
• [BioC] Heatmap ordering   Susan Holmes
• [BioC] Error creating marrayInfo   Jean Yee Hwa Yang
• [BioC] Westfall and Young "maxT"   Douglas Grove
• [BioC] RMA publications   Rafael A. Irizarry
• [BioC] RMA publications   Matthew Hobbs
• [BioC] Error creating marrayInfo   kfbargad at lg.ehu.es
• [BioC] how to generate dataset for multtest?   Rafael A. Irizarry
• [BioC] Error creating marrayInfo   Jean Yee Hwa Yang
• [BioC] Westfall and Young "maxT"   Sandrine Dudoit
• [BioC] Error creating marrayInfo   kfbargad at lg.ehu.es
• [BioC] Make read.marrayRaw upload data faster   Marcus Davy
• [BioC] Bioconductor on a mac   Michael Campbell
• [BioC] Different results on different version of Bioconductor   Tapan Mehta
• [BioC] Bioconductor on a mac   A.J. Rossini
• [BioC] Different results on different version of Bioconductor   Rafael A. Irizarry
• [BioC] Error creating marrayInfo   kfbargad at lg.ehu.es
• [BioC] Bioconductor on a mac   Jeff Gentry
• [BioC] Error creating marrayInfo   Marcus Davy
• [BioC] Problems with getBioC (reposTools, really) and package Rgraphviz   Rafal Kustra
• [BioC] Bioconductor on Mac   A.J. Rossini
• [BioC] Bioconductor on Mac   Susan Holmes
• [BioC] Bioconductor on Mac   Shinichiro Wachi
• [BioC] Missing name header in rma   Haddad, Ramsi
• [BioC] First Helps   Marcelo Luiz de Laia
• [BioC] RE: Dye Swap Experiments   michael watson (IAH-C)
• [BioC] Missing name header in rma   James MacDonald
• [BioC] Bioconductor on Mac   Naomi Altman
• [BioC] help on maInfo and bioc1.7.1   Lily Shiue
• [BioC] question about RMA and filtering   Phguardiol at aol.com
• [BioC] addendum to previous message   Phguardiol at aol.com
• [BioC] annaffy 1.0 Release   Colin A. Smith
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] Missing name header in rma   Rafael A. Irizarry
• [BioC] RE: Dye Swap Experiments   Gordon Smyth
• [BioC] RE: Dye Swap Experiments   James Wettenhall
• [BioC] First Helps   James Wettenhall
• [BioC] Re: [R] Fwd: how to make exprSet   Jeff Gentry
• [BioC] how to separate probe numbers from AffyIDs?   Jenny Drnevich
• [BioC] marrayInfo in BioConductor 1.2   White, Charles E WRAIR-Wash DC
• [BioC] how to separate probe numbers from AffyIDs?   Rafael A. Irizarry
• [BioC] Broken Link   blecharc at fas.harvard.edu
• [BioC] Broken Link   Jeff Gentry
• [BioC] hardware requirement for Bioconductor and R   Zhang Zhidong
• [BioC] marrayInfo in BioConductor 1.2   Jeff Gentry
• [BioC] how to separate probe numbers from AffyIDs?   Laurent Gautier
• [BioC] how to separate probe numbers from AffyIDs?   Marcus Davy
• [BioC] Utilizing outlier information in RMA and MAS estimation?   Lishuang Shen
• [BioC] implementation of an add-on package   Stephen Moore
• [BioC] RNA degradation plot   Bill Kenworthy
• [BioC] Utilizing outlier information in RMA and MAS estimation?   Laurent Gautier
• [BioC] Utilizing outlier information in RMA and MAS estimation?   Lishuang Shen
• [BioC] Memory problems with normalize.AffyBatch.quantiles   James MacDonald
• [BioC] vsn in BioConductor 1.2   White, Charles E WRAIR-Wash DC
• [BioC] using MM   Rafael A. Irizarry
• [BioC] vsn in BioConductor 1.2   w.huber at dkfz-heidelberg.de
• [BioC] R Hangs   michael watson (IAH-C)
• [BioC] Cannot install from .tar.gz   michael watson (IAH-C)
• [BioC] Affymetrix Chips with Missing Spike-Ins   Paul Boutros
• [BioC] Affymetrix Chips with Missing Spike-Ins   Rafael A. Irizarry
• [BioC] Cannot install from .tar.gz   w.huber at dkfz-heidelberg.de
• [BioC] Affy digestion plots   Oliver Hartmann
• [BioC] picture request for Nature journal   Loriot, Sarah
• [BioC] problems with affy in unix   feiwan
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] problems with affy in unix   James MacDonald
• [BioC] problems with affy in unix   fwan
• [BioC] problems with affy in unix   Rafael A. Irizarry
• [BioC] Re: Limma   Gordon Smyth
• [BioC] vsn in BioConductor 1.2   Isaac Neuhaus
• [BioC] vsn in BioConductor 1.2   White, Charles E WRAIR-Wash DC
• [BioC] problems with affy in unix   Naomi Altman
• [BioC] vsn in BioConductor 1.2   w.huber at dkfz-heidelberg.de
• [BioC] vsn in BioConductor 1.2   w.huber at dkfz-heidelberg.de
• [BioC] read.marrayInfo help   Christian Bowers
• [BioC] read.marrayInfo help   Jean Yee Hwa Yang
• [BioC] implementation of an add-on package   Rafael A. Irizarry
• [BioC] implementation of an add-on package   John Zhang
• [BioC] Re: RNA degradation   Leslie M. Cope
• [BioC] R Hangs   James MacDonald
• [BioC] R Hangs   Liaw, Andy
• [BioC] R Hangs   Jeff Gentry
• [BioC] R Hangs   Liaw, Andy
• [BioC] R Hangs   Jeff Gentry
• [BioC] vsn in BioConductor 1.2   Isaac Neuhaus
• [BioC] Problems Reading Cel Files   Jeff Lande
• [BioC] Problems Reading Cel Files   James MacDonald
• [BioC] New mouse chips annotation package   John Zhang
• [BioC] Function whatcdf   Wang, Hui
• [BioC] problems with affy in unix   Rafael A. Irizarry
• [BioC] New mouse chips annotation package   Crispin Miller
• [BioC] New mouse chips annotation package   Crispin Miller
• [BioC] position available   Joanne Chory
• [BioC] Invalid "marrayInfo"   Jean Yee Hwa Yang
• [BioC] Unable to Install on SUSE Linux 8.1   James MacDonald
• [BioC] Unable to Install on SUSE Linux 8.1   Jeff Gentry
• [BioC] Invalid "marrayInfo"   Straubhaar, Juerg
• [BioC] Unable to Install on SUSE Linux 8.1   michael watson (IAH-C)
• [BioC] problems with sample code from "Analysis of Gene Expression Data" Chap. 4   Chris Paulse
• [BioC] Unable to Install on SUSE Linux 8.1   michael watson (IAH-C)
• [BioC] Unable to Install on SUSE Linux 8.1   michael watson (IAH-C)
• [BioC] normalization and analysis of connected designs   Ramon Diaz-Uriarte
• [BioC] Unable to Install on SUSE Linux 8.1   James MacDonald
• [BioC] normalization and analysis of connected designs   w.huber at dkfz-heidelberg.de
• [BioC] normalization and analysis of connected designs   Ramon Diaz-Uriarte
• [BioC] difference between Affy & spotted arrays   Jenny Drnevich
• [BioC] Invalid "marrayInfo"   Hongxian He
• [BioC] Recent changes to Bioconductor packages   madman at jimmy.harvard.edu
• [BioC] Re: lm.series question   Gordon Smyth
• [BioC] Re: lm.series, design matrix   James Wettenhall
• [BioC] Invalid "marrayInfo" object   Jean Yee Hwa Yang
• [BioC] difference between Affy & spotted arrays   Naomi Altman
• [BioC] widgetTools error on "Update packages from Bioconductor"   Dave Waddell
• [BioC] RMA t-test   DMITRY GRIGORYEV
• [BioC] RMA t-test   James MacDonald
• [BioC] Errors   Moshe Shani
• [BioC] Errors when running maPlot function from marrayPlots   michael watson (IAH-C)
• [BioC] errors in imageplot() in limma   michael watson (IAH-C)
• [BioC] difference between Affy & spotted arrays   w.huber at dkfz-heidelberg.de
• [BioC] update.packages   Justin Borevitz
• [BioC] Invalid "marrayInfo" object   Rob Dunne
• [BioC] update.packages   Justin Borevitz
• [BioC] errors in imageplot() in limma   Gordon Smyth
• [BioC] GenePlotter - new user question   Chris Doucette
• [BioC] reading data into limma   Straubhaar, Juerg
• [BioC] marrayNorm 1.1.3 gets stuck   Rob Dunne
• [BioC] Subsetting marrayRaw   Jean Yee Hwa Yang
• [BioC] Error in marrayTools - gpTools()   Jean Yee Hwa Yang
• [BioC] setting up the data acquisition from the chip   De Rinaldis, Emanuele
• [BioC] mgu74av2CHRLOC   Chad Shaw
• [BioC] mgu74av2CHRLOC   Chad Shaw
• [BioC] Subsetting marrayRaw   michael watson (IAH-C)
• [BioC] Error in marrayTools - gpTools()   michael watson (IAH-C)
• [BioC] reading data into limma   Gordon Smyth
• [BioC] Error in marrayTools - gpTools()   michael watson (IAH-C)
• [BioC] marrayNorm - Getting Data Out   michael watson (IAH-C)
• [BioC] RNA degradation   Chris Paulse
• [BioC] reading data into limma   Gordon K Smyth
• [BioC] RMA t-test   Rafael A. Irizarry

Last message date: Thu Jul 31 23:31:13 MET 2003
Archived on: Wed Aug 6 17:39:21 MET 2003

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