[BioC] marrayNorm 1.1.3 gets stuck

Rob Dunne Rob.Dunne at csiro.au
Tue Jul 29 18:04:02 MEST 2003


Hi list,
      I am having trouble with bioconductor 1.2,
and particularly marrayNorm 1.1.3  which was installed with it.

It seems to get stuck in a loop 



 marrayNorm 1.1.1
> unix.time(experiment1.norm<-maNorm(experiment1, norm="loess"))
[1] 803.99  29.73 843.40   0.00   0.00

marrayNorm 1.1.3   (installed with bioconductor 1.2)
> unix.time(experiment1.norm<-maNorm(experiment1, norm="loess"))
Timing stopped at: 8874.73 19.65 10289.06 0 0 

ie I interrupted the process.


is there a known problem with this package?

					bye
					rob

-- 
Rob Dunne         Fax: +61 2 9325 3200     Tel: +61 2 9325 3263
CSIRO Mathematical and Information Sciences     +61 2 9325 3100
Locked Bag 17, North Ryde, New South Wales, Australia, 1670         
http://matilda.vu.edu.au/~dunne  Email: Rob.Dunne at csiro.au

        Java has certainly revolutionized marketing and litigation.



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