[BioC] Question

[Catherine.Eng at stud.unibas.ch]

HI,

I'm a student who begin to use R Language, I would like to know how to use 
genefinder (in library genefilter) in order to search a pattern. In fact, is it 
possible to assemble all values on the same rank.
For example, I have 4 conditions and I search a specific profile. The problem 
is the genes have differents intensities but they have close pattern of the 
query.

ex: 3 genes A,B,C
    4 conditons 
    A(values): 30, 40, 50, 60 
    B : 100, 110, 120, 130
    C : 35, 50, 55, 65

I search the gene with the same gene A profile, genefinder found gene C if I 
limit numResults = 1.
So, I would like to know if it's possible to superimpose on the gene A profile 
and extract gene B. I played with genescale unsuccessful.

Can you help!

Thanks,

         Catherine   

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