[BioC] Error Installation for Genefilter

Lisa Devereaux lisa.d at genetraks.com
Wed Jun 18 17:24:37 MEST 2003


Hello,
I am new to bioconductor and am having difficulty in loading Affymetrix
data. There appears to be a problem in loading/installing genefilter (as
per the extract below). Can anyone help me in order to fix this problem?

 
Thank  you
Lisa
 
> library(affy)
Error in checkPkgDeps(pkgname) : You can not load package Biobase as
it requires you to have package genefilter which is not currently
installed.
Error in checkPkgDeps(pkgname) : You can not load package Biobase as
it requires you to have package genefilter which is not currently
installed.
Error in getClass(Class) : "MIAME" is not a defined class
Error in library(affy) : .First.lib failed
> local({a<- CRAN.packages(CRAN=getOption("BIOC"))
+ install.packages(select.list(a[,1],,TRUE), .libPaths()[1],
available=a, CRAN=getOption("BIOC"))})
trying URL
`http://www.bioconductor.org/bin/windows/contrib/1.7/PACKAGES'
Content type `text/plain' length 11255 bytes
opened URL
downloaded 10Kb
 
trying URL
`http://www.bioconductor.org/bin/windows/contrib/1.7/genefilter_1.0.5.zi
p'
Content type `application/zip' length 524 bytes
opened URL
downloaded 524 bytes
 
Error in file(file, "r") : unable to open connection
In addition: Warning message: 
cannot open file `genefilter/DESCRIPTION'
 
Lisa Devereaux 
B.App Sci (Hons)
Biotechnician
 
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