[BioC] Compilation problem installing Bioconductor (RGraphviz)

[Peter Baker (CMIS, St Lucia)]

Hi 

Has anyone had this problem installing BioConductor on linux (RH 9.0)
and R 1.7.1?

I just grabbed the source tarball because I want to put it on a few
machines. It worked fine until it hit Rgraphviz.

Could it be gcc 3.2.2?

Regards
Peter


Installation problem
---------------------

* Installing *source* package 'Rgraphviz' ...
** libs
gcc -I/usr/local/lib/R/include `dotneato-config --cflags`  -I/usr/local/include -D__NO_MATH_INLINES -mieee-fp -Wall -fPIC  -g -O2 -c Rgraphviz.c -o Rgraphviz.o
/bin/sh: line 1: dotneato-config: command not found
In file included from Rgraphviz.c:1:
common.h:19:20: render.h: No such file or directory
common.h:20:19: graph.h: No such file or directory
common.h:21:22: dotprocs.h: No such file or directory
common.h:22:24: neatoprocs.h: No such file or directory
common.h:23:20: adjust.h: No such file or directory
In file included from Rgraphviz.c:1:
common.h:37: parse error before '*' token
common.h:38: parse error before '*' token

many warnings deleted

Rgraphviz.c:511: `twopi_nodesize' undeclared (first use in this function)
make: *** [Rgraphviz.o] Error 1
ERROR: compilation failed for package 'Rgraphviz'

Details of system
-----------------
** Redhat 9.0 all rpms updated

$ uname -a
Linux hostname_here 2.4.20-18.9smp #1 SMP Thu May 29 06:55:05 EDT 2003 i686 i686 i386 GNU/Linux
$ gcc --version
gcc (GCC) 3.2.2 20030222 (Red Hat Linux 3.2.2-5)


** R 1.7.1 built from source:
> version
         _
platform i686-pc-linux-gnu
arch     i686
os       linux-gnu
system   i686, linux-gnu
status
major    1
minor    7.1
year     2003
month    06
day      16
language R



-- 
Dr Peter Baker, Statistician (Bioinformatics/Genetics),
CSIRO Mathematical & Information Sciences, Queensland Bioscience Precinct
306 Carmody Road, St Lucia Qld 4067.   Australia. 
Email: <Peter.Baker at csiro.au>  
WWW: http://www.cmis.csiro.au/Peter.Baker/
Phone:+61 7 3214 2210   Fax:+61 7 3214 2900