[BioC] Compilation problem installing Bioconductor (RGraphviz)

[A.J. Rossini]

Are you making sure that you are getting a very recent (i.e. from the
Lucent/Bell Labs wwwsite http://www.graphviz.org/, I think?) version? 

I suspect that the rpm install won't do the trick.

best,
-tony


"Peter Baker (CMIS, St Lucia)" <Peter.Baker at csiro.au> writes:

> Hi Toni
>
> I have now installed graphviz: thanks!
>
> However, after either source or rpm install of graphviz, while I get a
> lot less warnings it still appears to crash at the same spot in
> comilation.
>
> Rgraphviz.c:511: `twopi_nodesize' undeclared (first use in this function)
> Rgraphviz.c:511: (Each undeclared identifier is reported only once
> Rgraphviz.c:511: for each function it appears in.)
> make: *** [Rgraphviz.o] Error 1
> ERROR: compilation failed for package 'Rgraphviz'
>
> Is there an easy way to drop this package out of the install?
>
> Thanks
>
> Cheers
> Peter
>
> On Wed, 18 Jun 2003 rossini at blindglobe.net wrote:
>
>>
>>Have you installed  graphviz (a recent version)?
>>
>>
>>"Peter Baker (CMIS, St Lucia)" <Peter.Baker at csiro.au> writes:
>>
>>> Hi 
>>>
>>> Has anyone had this problem installing BioConductor on linux (RH 9.0)
>>> and R 1.7.1?
>>> many warnings deleted
>>>
>>> Rgraphviz.c:511: `twopi_nodesize' undeclared (first use in this function)
>>> make: *** [Rgraphviz.o] Error 1
>>> ERROR: compilation failed for package 'Rgraphviz'
>>>
>>> Details of system
>>> -----------------
>>> ** Redhat 9.0 all rpms updated
>>>
>>> $ uname -a
>>> Linux hostname_here 2.4.20-18.9smp #1 SMP Thu May 29 06:55:05 EDT 2003 i686 i686 i386 GNU/Linux
>>> $ gcc --version
>>> gcc (GCC) 3.2.2 20030222 (Red Hat Linux 3.2.2-5)
>>>
>>>
>>> ** R 1.7.1 built from source:
>>>> version
>>>          _
>>> platform i686-pc-linux-gnu
>>> arch     i686
>>> os       linux-gnu
>>> system   i686, linux-gnu
>>> status
>>> major    1
>>> minor    7.1
>>> year     2003
>>> month    06
>>> day      16
>>> language R
>>>
>>>
>>>
>>> -- 
>>> Dr Peter Baker, Statistician (Bioinformatics/Genetics),
>>> CSIRO Mathematical & Information Sciences, Queensland Bioscience Precinct
>>> 306 Carmody Road, St Lucia Qld 4067.   Australia. 
>>> Email: <Peter.Baker at csiro.au>  
>>> WWW: http://www.cmis.csiro.au/Peter.Baker/
>>> Phone:+61 7 3214 2210   Fax:+61 7 3214 2900
>
>

-- 
A.J. Rossini  /  rossini at u.washington.edu  /  rossini at scharp.org
http://software.biostat.washington.edu/ UNTIL IT MOVES IN JULY.
Biomedical and Health Informatics, University of Washington
Biostatistics, HVTN/SCHARP, Fred Hutchinson Cancer Research Center.
FHCRC: 206-667-7025 (fax=4812)|Voicemail is pretty sketchy/use Email 

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