[BioC] Compilation problem installing Bioconductor (RGraphviz)

[Robert Gentleman]

Yep, you need a newer version of graphviz;
 the one that I am using is
   graphviz-1.9.20030616.0415

 unfortunately on the graphviz site they label it as:
  graphviz-current.tar.gz
 which is rather unfortunate because you can't tell which it is until
  you get it (there is a bug as well in that version - which may have
  already been fixed, I reported it earlier this week),

  Robert

On Thu, Jun 19, 2003 at 05:13:50PM +1000, Peter Baker (CMIS, St Lucia) wrote:
> Hi Toni
> 
> I have now installed graphviz: thanks!
> 
> However, after either source or rpm install of graphviz, while I get a
> lot less warnings it still appears to crash at the same spot in
> comilation.
> 
> Rgraphviz.c:511: `twopi_nodesize' undeclared (first use in this function)
> Rgraphviz.c:511: (Each undeclared identifier is reported only once
> Rgraphviz.c:511: for each function it appears in.)
> make: *** [Rgraphviz.o] Error 1
> ERROR: compilation failed for package 'Rgraphviz'
> 
> Is there an easy way to drop this package out of the install?
> 
> Thanks
> 
> Cheers
> Peter
> 
> On Wed, 18 Jun 2003 rossini at blindglobe.net wrote:
> 
> >
> >Have you installed  graphviz (a recent version)?
> >
> >
> >"Peter Baker (CMIS, St Lucia)" <Peter.Baker at csiro.au> writes:
> >
> >> Hi 
> >>
> >> Has anyone had this problem installing BioConductor on linux (RH 9.0)
> >> and R 1.7.1?
> >> many warnings deleted
> >>
> >> Rgraphviz.c:511: `twopi_nodesize' undeclared (first use in this function)
> >> make: *** [Rgraphviz.o] Error 1
> >> ERROR: compilation failed for package 'Rgraphviz'
> >>
> >> Details of system
> >> -----------------
> >> ** Redhat 9.0 all rpms updated
> >>
> >> $ uname -a
> >> Linux hostname_here 2.4.20-18.9smp #1 SMP Thu May 29 06:55:05 EDT 2003 i686 i686 i386 GNU/Linux
> >> $ gcc --version
> >> gcc (GCC) 3.2.2 20030222 (Red Hat Linux 3.2.2-5)
> >>
> >>
> >> ** R 1.7.1 built from source:
> >>> version
> >>          _
> >> platform i686-pc-linux-gnu
> >> arch     i686
> >> os       linux-gnu
> >> system   i686, linux-gnu
> >> status
> >> major    1
> >> minor    7.1
> >> year     2003
> >> month    06
> >> day      16
> >> language R
> >>
> >>
> >>
> >> -- 
> >> Dr Peter Baker, Statistician (Bioinformatics/Genetics),
> >> CSIRO Mathematical & Information Sciences, Queensland Bioscience Precinct
> >> 306 Carmody Road, St Lucia Qld 4067.   Australia. 
> >> Email: <Peter.Baker at csiro.au>  
> >> WWW: http://www.cmis.csiro.au/Peter.Baker/
> >> Phone:+61 7 3214 2210   Fax:+61 7 3214 2900
> 
> _______________________________________________
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> Bioconductor at stat.math.ethz.ch
> https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor

-- 
+---------------------------------------------------------------------------+
| Robert Gentleman                 phone : (617) 632-5250                   |
| Associate Professor              fax:   (617)  632-2444                   |
| Department of Biostatistics      office: M1B20                            |
| Harvard School of Public Health  email: rgentlem at jimmy.harvard.edu        |
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