[BioC] Affy RNA digestion plots (fwd)
Hinnerk Boriss
boriss at izbi.uni-leipzig.de
Tue Mar 11 13:48:28 MET 2003
Hi!
What does the p-value of the RNA degradation test actually say and where
do things begin to become critical?
For instance, I have data here where the p-values are rather low
(hgu133A chips) and in fact the slopes are positive!
What is the appropriate interpretation? No RNA degradation? Something
funny??
> summaryAffyRNAdeg(deg)
X1 X2 K1 K2 L1 L2
slope 1.44 1.57 1.28 1.24 2.15 1.51
pvalue 5.91e-08 2.74e-08 7.11e-07 6.65e-07 8.93e-09 2.88e-08
Cheers,
Hinnerk
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