[BioC] Recent changes to Bioconductor packages
madman at jimmy.harvard.edu
madman at jimmy.harvard.edu
Sat Mar 29 05:00:02 MET 2003
This is an automated message sent out weekly to report recent changes
to Bioconductor packages. Please see the URL
http://www.bioconductor.org/changelog.html for a complete history.
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March 28, 2003: Biobase - started removing and revising code to get ready
for the next release
March 28, 2003: getBioC - The parameter 'force', which was a version number
force for binary packages has been moved to 'versForce', to more align
with the reposTools parameters. Likewise, 'force' now corresponds to
forcing a package to be installed even if all of its dependencies are not
available. JG
March 28, 2003: reposTools - An error in backpatching some changes caused a bug
in the release branch which would throw an error when the R version did not
match the R version the package was built under. (release1.1 only) JG
March 27, 2003: annotate - Added a new function 'installDataPackage'
which wraps the reposTools function install.packages2, to simply
retrieve and install a requested Bioconductor data package. Also,
the function pmAbst2html is now pmAbst2HTML. JG
March 26, 2003: getBioC - added a 'method' parameter which works with the
reposTools functions. JG
March 25, 2003: reposTools - Added parameter 'method' to *.packages2 functions
which is then passed on to the download.file calls used internally. This
allows users to specify the 'wget' download method for files, useful
if behind a proxy. (devel & release1.1) JG
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