[BioC] Re: SAM: Significance of Microarray Analysis availability

[Nicholas Lewin-Koh]

Hi,
You can take a look at John Storey's web site, he has R code there for
calculating
q-values, their version of the FDR. However, I don't think that they have
implemented the whole thing in R in anything publically avaialable, as
they are marketing their excel package.

You could always use the R-excel package at CRAN and just push the data
back and forth. Or do it the way most of us do:
write.table(...)

open excel,
do whatever

Save as csv

read.table(...)

etc.

Nicholas 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Mon, 31 Mar 2003 15:30:09 +0800
> From: "Adaikalavan Ramasamy" <gisar at nus.edu.sg>
> Subject: [BioC] SAM: Significance of Microarray Analysis availability
> 	in R
> To: <r-help at stat.math.ethz.ch>, <bioconductor at stat.math.ethz.ch>
> Message-ID:
> 	<024D6AEFCB92CB47BA1085751D184BB80105F236 at MBXSRV03.stf.nus.edu.sg>
> Content-Type: text/plain;       charset="us-ascii"
> 
> Dear all, 
> 
> I have been asked to compare the SAM method on some datasets I have.
> Searching the archives and help files for SAM was not fruitful. As I
> understand it is available as Excel add-in and not in R. 
> 
> I am wondering if anyone has written this (in R or S-PLUS) and would be
> willing to share it or at least point me right direction. Thank you. 
> 
> Regards, Adai.
> 
> 
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