[BioC] How package I use for verify differentialy expressed genes after Normalization with marrayNorm?

Jean Yee Hwa Yang jean at biostat.ucsf.edu
Mon Nov 3 20:29:28 MET 2003

Hi Marcelo,

Use the package limma, take a look at the help file for the function
"lmFit"; help(lmFit) for more information.  

> I put the Control in the Green (Cy3) and the Treated in the Red (Cy5). Is it
> ok?

That is fine,  maM(ka.susc.norm) will return normalized log-ratios =
log(Cy5 / cy3) which is log(Treated/control).



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