[BioC] index between genes and pathways

John Zhang jzhang at jimmy.harvard.edu
Wed Nov 19 14:45:08 MET 2003

>As you have known, "AnnBuilder" provide the well-annotation of GO and KEGG.
>I would like to know the index between genes and pathways in Yeast. Namely,
>I want to know whether the gene is belong to which pathway or not? However,
>I cannot find the functions in "AnnBuilder" package might link the genes to
>pathways. Can any body give me some suggestions?

Have a look at the YEAST annotation package, where you will find links between 
ORF ids and GO and KEGG ids.

>Thank you for the help.
>Shih-Te Yang, Ph.D. student
>Bioinformatics Research Center
>Institute of Biochemistry
>School of Life Science
>National Yang-Ming University
>E-mail:g38903040 at ym.edu.tw
>MyWeb: http://binfo.ym.edu.tw/styang/
>Bioconductor mailing list
>Bioconductor at stat.math.ethz.ch

Jianhua Zhang
Department of Biostatistics
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084

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