[BioC] From Unigene IDs to PubMed abstracts

[Robert Gentleman]

Hi,
 there are a number of functions in the annotate package, there is a
 Vignette entitled:
    HowTo: Automated Querying of PubMed Data

 and some of the lab materials also has examples of how to do a number
 of different things like obtaining abstracts and searching them using
 regular expressions.

  Robert


  
On Thu, Nov 20, 2003 at 11:11:23AM -0500, John Zhang wrote:
> 
> >Hello All, Could anybody be able to assist me in trying to use R to 
> >retrieve PubMed abstracts for a list of Unigene IDs?
> 
> Have a look at the "pubmed" function in package "annotate". To map UG ids to LL 
> ids that are required by "pubmed", use the package "XXXXLLMappings", where XXXX 
> is the name of an organism (e. g. humanLLMappings).
> 
> >
> >I thank you in advance for your kind assistance.
> >Lawrence
> >
> >_____________________________________________
> >Lawrence-Paul Petalidis
> >Department of Pathology
> >Division of Molecular Histopathology
> >University of Cambridge
> >
> >Visiting Researcher
> >Human Genome Mapping Project Resource Centre
> >
> >_______________________________________________
> >Bioconductor mailing list
> >Bioconductor at stat.math.ethz.ch
> >https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor
> 
> Jianhua Zhang
> Department of Biostatistics
> Dana-Farber Cancer Institute
> 44 Binney Street
> Boston, MA 02115-6084
> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor

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| Robert Gentleman                 phone : (617) 632-5250                   |
| Associate Professor              fax:   (617)  632-2444                   |
| Department of Biostatistics      office: M1B20                            |
| Harvard School of Public Health  email: rgentlem at jimmy.harvard.edu        |
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