[BioC] limma question

James Wettenhall wettenhall at wehi.edu.au
Sat Apr 3 06:29:29 CEST 2004


> toptable(coef=2,num=10,genelist=gal,fit=fit,adjust="fdr",sort.by="P")
> I would like to know to which effect the quoted P.values in toptable()
> correspond to ? 

coef=2 means the effect described by the second column of your 
design matrix.

Hope this helps,

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