[BioC] ll.htmlpage question

[Wolfgang Huber]

Hi Fátima

> I have recently updated tp BioConductor 1.5 and upon trying to use the
> function "ll.htmlpage" from the package "annotate" I seem to encounter
> the following problem:
> 
> 
>>ll.htmlpage(xxxLI, filename = "xxx.html", 
> 
> +             title = "xxx", othernames = data.frame(xxxRes,
> +                                              pvalue=xxxP,FC), 
> +             table.head = c("Locus ID", "Gene Symbol", "Pvalue","FC"),
> table.center = TRUE)
> 
> Error: couldn't find function "ll.htmlpage"
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> 
> This function used to work fine in the previous versions of BioC as far
> as I can tell. Has it been deprecated? Abolished? Am I doing something
> terribly wrong - most likely possibility :-)-?

It seems that somebody has renamed this function (rightly so, in my 
opinion, since the previous name didn't make too much sense). Try

 > help.search("htmlpage")


HTMLPage-class(annotate)
                 Classes to represent HTML pages
htmlpage(annotate)
                 Functions to build HTML pages



and there are also some related (and probably mildly duplicative) functions:

write.htmltable(arrayMagic)
                 Write a data frame into an html
                 table within a html page
htmlPage(marray)
                 Display gene list as a HTML
                 page



Best regards
   Wolfgang

-------------------------------------
Wolfgang Huber
European Bioinformatics Institute
European Molecular Biology Laboratory
Cambridge CB10 1SD
England
Phone: +44 1223 494642
Fax:   +44 1223 494486
Http:  www.ebi.ac.uk/huber