[BioC] affylmGUI gene list from Venn diagram, was: (no
kidd at mail.rockefeller.edu
Fri Jun 18 18:12:47 CEST 2004
At 12:57pm +1000 18/6/04, James Wettenhall wrote:
>On Thu, 17 Jun 2004, Simon Kidd wrote:
>> Do the p values that affylmgui uses to calculate the venn diagram
> > correspond to those given in the toptable lists?
>class(a) <- "matrix"
>This should give you the list of genes in the intersection.
This worked right upto the end where it gave me the following error message:
Error in data.frame(geneIDs = geneIDs, a) :
arguments imply differing number of rows: 14010, 8
Iam wondering is this because we have only three contrasts set up
encompassing four targets but the targets file contains additional
target entries? Another possibility is that we are using probeID's,
there seems to be no corresponding geneID's for Drosophila.
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