[BioC] Error in parse() loading affylmGUI

James Wettenhall wettenhall at wehi.edu.au
Tue Jun 22 04:28:36 CEST 2004

Hi Paul,

I'm running R 1.9.0, limma 1.6.14 and affylmGUI 1.1.0 without 
problems on Windows 2000/NT.  Can I suggest reinstalling limma 
and affylmGUI with:

after checking that .libPaths() is set appropriately.
Maybe you got a corrupt download last time.

> When I load the library and start the interface I get an error-box popping up 
> saying:
> Error in parse(file,n,text,prompt): parse error

Do you have any files in the etc/ subdirectory of affylmGUI with 
extension .R ?  affylmGUI sources these .R files automatcially 
when it starts so that they can be used as custom menu items.

Please use the correct capitalization:

instead of library(affylmgui)

Hope this helps,

> And nothing suspicous appears in the console:
> > library(affylmgui);
> Loading required package: limma 
> Loading required package: affy 
> Welcome to Bioconductor 
>          Vignettes contain introductory material.  To view, 
>          simply type: openVignette() 
>          For details on reading vignettes, see
>          the openVignette help page.
> Loading required package: tcltk 
> Warning message: 
> Package 'affylmgui' not found.
>  Using case-insensitive match 'affylmGUI' .
>  Future versions of R will require exact matches. 
> ActiveTcl was found in the Windows Registry (for LOCAL_MACHINE), installed in
> E:\tcl
> This directory will be added to the Tcl search path to enable affylmGUI
> to find the Tktable and BWidget extensions.
> To begin, type affylmGUI() or use the pull-down menu.
> Searching for user-defined affylmGUI commands in 
> C:/PROGRA~1/R/rw1090/library/affylmGUI/etc ...
> Any suggestions?
> Paul
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