[BioC] Error in parse() loading affylmGUI
wettenhall at wehi.edu.au
Tue Jun 22 04:28:36 CEST 2004
I'm running R 1.9.0, limma 1.6.14 and affylmGUI 1.1.0 without
problems on Windows 2000/NT. Can I suggest reinstalling limma
and affylmGUI with:
after checking that .libPaths() is set appropriately.
Maybe you got a corrupt download last time.
> When I load the library and start the interface I get an error-box popping up
> Error in parse(file,n,text,prompt): parse error
Do you have any files in the etc/ subdirectory of affylmGUI with
extension .R ? affylmGUI sources these .R files automatcially
when it starts so that they can be used as custom menu items.
Please use the correct capitalization:
instead of library(affylmgui)
Hope this helps,
> And nothing suspicous appears in the console:
> > library(affylmgui);
> Loading required package: limma
> Loading required package: affy
> Welcome to Bioconductor
> Vignettes contain introductory material. To view,
> simply type: openVignette()
> For details on reading vignettes, see
> the openVignette help page.
> Loading required package: tcltk
> Warning message:
> Package 'affylmgui' not found.
> Using case-insensitive match 'affylmGUI' .
> Future versions of R will require exact matches.
> ActiveTcl was found in the Windows Registry (for LOCAL_MACHINE), installed in
> This directory will be added to the Tcl search path to enable affylmGUI
> to find the Tktable and BWidget extensions.
> To begin, type affylmGUI() or use the pull-down menu.
> Searching for user-defined affylmGUI commands in
> C:/PROGRA~1/R/rw1090/library/affylmGUI/etc ...
> Any suggestions?
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