[BioC] limmaGUI update
wettenhall at wehi.edu.au
Wed Jun 23 06:00:13 CEST 2004
I've just uploaded limmaGUI_1.1.2 to :
It has some bug fixes:
- When the user chose not to use background correction, limmaGUI
gave an error "BCMethod undefined". Fixed now.
- In the color-coded MA plots, the title was being set twice,
once by the main= argument and once by title(). This is fixed
now. The main argument of plotMA is now set to "" and then
title() is used. This is because limmaGUI uses tkrplot which
gives warnings when using main=.
- Exporting an HTML report failed if used immediately after
loading in a data set, because the array layout wasn't yet
defined. This is fixed now. The array layout is now
defined immediately after reading in the GAL file.
- The function plotMAlimmaGUI has been removed from plot.R.
This was just a temporary function used while experimenting
with new arguments added to limma's plotMA function. But
now that limma has these new arguments, plotMAlimmaGUI is
no longer needed. All calls to plotMAlimmaGUI (including
one in the HTML report function), have now been replaced
with calls to plotMA.
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