[BioC] Install of 1.5 Packages fails

[Thomas Girke]

Robert,
Thanks, this solved my problem.

Thomas
	

On Tue 11/02/04 16:43, Robert Gentleman wrote:
> On Tue, Nov 02, 2004 at 01:21:22PM -0800, Thomas Girke wrote:
> > I am experiencing some problems installing the new Bioconductor Package Release 1.5 
> > under R-2.0.0 on a Linux Debian machine. Below are my commands and the error summary.
> > As a result, none of the packages that I need are working under R-2.0.0.
> > Any help with this would be highly appreciated.
> > 
> > > source("http://www.bioconductor.org/getBioC.R")
> > > getBioC()
> >  	Running getBioC version 1.2.68....
> > 	.............stuff................
> > 	You have downloaded a default set of packages.
> > 	If you wish to see other download options, please go to the URL:
> > 	http://www.bioconductor.org/faq.html#getBioC
> > 	Warning messages: 
> > 	1: Installation of package affyPLM had non-zero exit status in:
> > 	installPkg(fileName, pkg, pkgVer, type, lib, repEntry, versForce) 
> 
>  try just install one of these individually,
>  something like:
> 
>   library(reposTools)
>   install.packages2("affyPLM")
> 
>   and see what the output of that is. In particular it should give you
>   some hints about the problem - fix these, and repeat for the other
>   packages. 
> 
>   Robert
> 
> 
> > 	2: Installation of package annaffy had non-zero exit status in:
> > 	installPkg(fileName, pkg, pkgVer, type, lib, repEntry,
> > 			versForce) 
> > 	3: Installation of package genefilter had non-zero exit status
> > 	in: installPkg(fileName, pkg, pkgVer, type, lib, repEntry,
> > 			versForce) 
> > 	4: Installation of package edd had non-zero exit status in:
> > 	installPkg(fileName, pkg, pkgVer, type, lib, repEntry,
> > 			versForce) 
> > 	5: Installation of package marray had non-zero exit status in:
> > 	installPkg(fileName, pkg, pkgVer, type, lib, repEntry,
> > 			versForce) 
> > 	
> > 
> > 
> > -- 
> > Thomas Girke
> > 108 Noel T. Keen Hall
> > University of California
> > Riverside, CA 92521
> > 
> > E-mail: thomas.girke at ucr.edu
> > Website: http://faculty.ucr.edu/~tgirke
> > Ph: 951-787-2469
> > Fax: 951-787-4437
> > 
> > _______________________________________________
> > Bioconductor mailing list
> > Bioconductor at stat.math.ethz.ch
> > https://stat.ethz.ch/mailman/listinfo/bioconductor
> 
> -- 
> +---------------------------------------------------------------------------+
> | Robert Gentleman                 phone : (617) 632-5250                   |
> | Associate Professor              fax:   (617)  632-2444                   |
> | Department of Biostatistics      office: M1B20                            |
> | Harvard School of Public Health  email: rgentlem at jimmy.harvard.edu        |
> +---------------------------------------------------------------------------+
> 
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-- 
Thomas Girke
108 Noel T. Keen Hall
University of California
Riverside, CA 92521

E-mail: thomas.girke at ucr.edu
Website: http://faculty.ucr.edu/~tgirke
Ph: 951-787-2469
Fax: 951-787-4437