[BioC] GOLL2GO

John Zhang jzhang at jimmy.harvard.edu
Wed Nov 10 18:51:56 CET 2004


It is now GOLOCUSID2GO to make the naming the consistant throughout packages. We 
will update the information on the web. Thanks.

>I am wondering if GOLL2GO is not available anymore in the GO package.
>
>I just downloaded R 2.0.0 and installed Bioconductor. 
>
>Although in the online description of GO the environment GOLL2GO  is listed, I 
can not find it in my installed version.
>
>The output of GO() is 
>Quality control information for  GO
>Date built:  Tue Sep 28 14:59:13 2004
>Mappings found for non-probe based rda files:
>         GOALLLOCUSID found 7514
>         GOBPANCESTOR found 8808
>         GOBPCHILDREN found 4244
>         GOBPOFFSPRING found 4244
>         GOBPPARENTS found 8808
>         GOCCANCESTOR found 1420
>         GOCCCHILDREN found 470
>         GOCCOFFSPRING found 470
>         GOCCPARENTS found 1420
>         GOLOCUSID2ALLGO found 37866
>         GOLOCUSID2GO found 37866
>         GOLOCUSID found 6246
>         GOMFANCESTOR found 7370
>         GOMFCHILDREN found 1337
>         GOMFOFFSPRING found 1337
>         GOMFPARENTS found 7370
>         GOTERM found 17601
>
>I have several scripts that depend on GO and I wonder if I will have to rewrite 
them. 
>Is LOCUSID same as LL (locus link) and why the change?
>
>Thanks,
>
>Ricardo.
>
>~~~~~~~~~~~~~~~~~~~~~~
> Ricardo A. Verdugo S., M.V.
> Juan Medrano Laboratory
> Animal Science Dept.
> UC Davis, CA 95616
>~~~~~~~~~~~~~~~~~~~~~~
>	[[alternative HTML version deleted]]
>
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Jianhua Zhang
Department of Biostatistics
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084



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