[BioC] HGU95a and HGU95av2 with gcrma

Wolfgang Huber huber at ebi.ac.uk
Mon Nov 22 18:38:19 CET 2004

Hi Vincent
  An idea would be to make a package from the cdf environment produced
> by combineAffyBatch. But I don't see how to do this from
> make.cdf.package, which takes only Affymetrix CDF files as argument.
> How to make gcrma to use rawc$cdf?
What is


Other than creating a new CDF package, I think it should work if you 
create a variable with that name in your top level workspace that is the 
CDF environment, e.g.

   hgu95av12mixcdf = rawc$cdf

Let me know if that helps.
Wolfgang Huber
European Bioinformatics Institute
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Cambridge CB10 1SD
Phone: +44 1223 494642
Phone: +44 1223 4944486
Http:  www.ebi.ac.uk/huber

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