[BioC] error readAffy

Auer Michael michael.auer at meduniwien.ac.at
Wed Oct 27 16:23:25 CEST 2004


I am using Windows XP, R 2.0.0. and affy package 1.5.8

I have copied the files to the folder “//Marvel-xms4rmgc/festplatte/A2M
Lab/01 Customers/AKH/Erowic/data/filename.cel"

sample.names<- c("SCC9_A_0"," SCC9_A_C"," SCC9_A_N”,” SCC9_A_CN”,
"SCC9_B_0"," SCC9_B_C"," SCC9_B_N”,” SCC9_B_CN”, "SCC9_C_0"," SCC9_C_C","
SCC9_C_N”,” SCC9_C_CN”)

sample.files<-c(“//Marvel-xms4rmgc/festplatte/A2M Lab/01
Customers/AKH/Erowic/data/BE_102104_sampleSSC 9 A o.CEL”,
“//Marvel-xms4rmgc/festplatte/A2M Lab/01
Customers/AKH/Erowic/data/BE_102104_sampleSSC 9 A c.CEL”,
“//Marvel-xms4rmgc/festplatte/A2M Lab/01
Customers/AKH/Erowic/data/BE_102104_sampleSSC9 A n.CEL”,
“//Marvel-xms4rmgc/festplatte/A2M Lab/01
Customers/AKH/Erowic/data/BE_102104_sampleSSC 9 A  c+n.CEL”,
“//Marvel-xms4rmgc/festplatte/A2M Lab/01
Customers/AKH/Erowic/data/BE_102104_sampleSSC 9 B o.CEL”,
“//Marvel-xms4rmgc/festplatte/A2M Lab/01
Customers/AKH/Erowic/data/BE_102104_sampleSSC 9 B c.CEL”,
“//Marvel-xms4rmgc/festplatte/A2M Lab/01
Customers/AKH/Erowic/data/BE_102104_sampleSSC 9 B n.CEL”,
“//Marvel-xms4rmgc/festplatte/A2M Lab/01
Customers/AKH/Erowic/data/BE_102104_sampleSSC 9 B c+n.CEL”,
“//Marvel-xms4rmgc/festplatte/A2M Lab/01
Customers/AKH/Erowic/data/BE_102204_sample SSC9 C o.CEL”,
“//Marvel-xms4rmgc/festplatte/A2M Lab/01
Customers/AKH/Erowic/data/BE_102204_sample SSC9 C c.CEL”,
“//Marvel-xms4rmgc/festplatte/A2M Lab/01
Customers/AKH/Erowic/data/BE_102204_sample SSC9 C n.CEL”,
“//Marvel-xms4rmgc/festplatte/A2M Lab/01
Customers/AKH/Erowic/data/BE_102204_sample SSC9 C c+n.CEL”)



I am loading the library

 library(affy)
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
         Vignettes contain introductory material.  To view,
         simply type: openVignette()
         For details on reading vignettes, see
         the openVignette help page.
Loading required package: reposTools


Then I am using ReadAffy and the following error message occurs with two
of the arrays.

pleca<-ReadAffy(filenames=sample.files,sampleNames =sample.names)
Error in initialize(value, ...) : Could not open file //Marvel-xm
4rmgc/festplatte/A2M Lab/01 Customers/AKH/Erowic/data/BE_102204_sample
SSC9 C n.CEL

What is the problem? Can anybody help. I can't go back to a former
release, because R 2.0.0. doesn't accept it.

Thanks



More information about the Bioconductor mailing list