[BioC] latest devel GO package not built in R2.0.0

[John Zhang]

>> library(reposTools)
>Loading required package: tools 
>> install.packages2("GO", develOK = TRUE)
>Note: You did not specify a download type.  Using a default value of: Win32 
>This will be fine for almost all users

Sorry, we were only able build the GO package under 2.0.0 for unix but not for 
Windows yet. You may try using a unix machine or wait until next week when our 
CVS is back.

>
>[1] "Attempting to download GO from 
http://www.bioconductor.org/data/metaData-devel/"
>[1] "Download complete."
>[1] "Installing GO"
>Note: Running R version 2.0.0 and package GO was built for R version 1.9.0
>  , installing anyway.
>
>[1] "Installation complete"
>>From URL:  http://www.bioconductor.org/data/metaData-devel/
>         GO version 1.6.2
>
>> library(annaffy)
>Loading required package: Biobase 
>Welcome to Bioconductor
>          Vignettes contain introductory material.  To view,
>          simply type: openVignette()
>          For details on reading vignettes, see
>          the openVignette help page.
>Error: package 'GO' required by 'annaffy' could not be found
>> local({pkg <- select.list(sort(.packages(all.available = TRUE)))
>+ if(nchar(pkg)) library(pkg, character.only=TRUE)})
>Error in library(pkg, character.only = TRUE) :
>         'GO' is not a valid package -- installed < 2.0.0?
>
>Not usre what to try next.
>
>Thanks very much,
>Dick
>
>*******************************************************************************
>Richard P. Beyer, Ph.D.	University of Washington
>Tel.:(206) 616 7378	Env. & Occ. Health Sci. , Box 354695
>Fax: (206) 685 4696	4225 Roosevelt Way NE, # 100
> 			Seattle, WA 98105-6099
>http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html
>*******************************************************************************
>
>On Fri, 24 Sep 2004, John Zhang wrote:
>
>>
>>> but it was built in 1.9.0, so I can't load it in 2.0.0beta.  Would someone
>> please build GO for R2.0.0?
>>
>> Now, if you do
>>
>>> library(reposTools)
>>> install.packages2("GO", develOK = TRUE)
>>
>> you will get the devel GO package built under R 2.0.0. The package still has 
a
>> version number 1.6.2 but the GOTERM environment is a list of lists rather 
than a
>> list of GOTerms objects as it was before (we could not change the version 
number
>> due to a problem with our CVS). The reason for having a list of lists is to 
save
>> space as the data packages are getting bigger and bigger.
>>
>>>
>>> I am trying to use annaffy for the affy mouse4302 chip, but the mouse4302 
meta
>> data is only for R2.0.0.  So I think I am stuck.
>>>
>>> Thanks very much,
>>> Dick
>>> 
*******************************************************************************
>>> Richard P. Beyer, Ph.D.	University of Washington
>>> Tel.:(206) 616 7378	Env. & Occ. Health Sci. , Box 354695
>>> Fax: (206) 685 4696	4225 Roosevelt Way NE, # 100
>>> 			Seattle, WA 98105-6099
>>> http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html
>>>
>>> _______________________________________________
>>> Bioconductor mailing list
>>> Bioconductor at stat.math.ethz.ch
>>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>>
>> Jianhua Zhang
>> Department of Biostatistics
>> Dana-Farber Cancer Institute
>> 44 Binney Street
>> Boston, MA 02115-6084
>>
>>
>

Jianhua Zhang
Department of Biostatistics
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084