[BioC] How extract F.p.value and lods values from a eBayes object in limma???

Marcelo Luiz de Laia mlaia at fcav.unesp.br
Thu Apr 14 20:07:56 CEST 2005


Hi,

I do the commands:

todos20050401.fit3 <- eBayes(todos20050401.fit2)
selected <- p.adjust(todos20050401.fit3$F.p.value,method="fdr")<0.05
selected.result <- todos20050401.fit3$genes[selected,]
write.table(selected.result,"selected.F.p.value0.05.csv",sep=",")

In my cvs file I get the name of genes, but I don t get the "F.p.value" 
nor "lods" values.

I try:

todos20050401.fit3$genes[selected,],todos20050401.fit3$F.p.value,todos20050401.fit3$lods 

Error: syntax error

I read about cbind, but I don t obtain success, too.

Please, Anyone point me if is possible todo?

Thanks

Marcelo



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