[BioC] LIMMA:nestedF in
daniela.marconi at gmail.com
Mon Dec 12 14:27:20 CET 2005
I have a question about decideTests with method "nestedF".
As I saw, this function can't handle with NA values!
How can I realize a nestedF classification with a fit with NA values?
I found two solutions by myself. But I'm not sure about!!!
1) I've tryed to list the function decideTests and then I've created a
new function decide.mine only
stop("nestedF method can't handle NA p-values", call. = FALSE)
from the code
sel <- p.adjust(object$F.p.value, method = adjust.method) < p.value
I've tryed also with:
fit2$F.p.value<-p.adjust(fit2$F.p.value, method = "HY")
which one is correct?
Or otherwise How I can manage, to apply nestedF approach with an
MA-list with NA values??
Thanks in advance
More information about the Bioconductor