[BioC] Time course experiment....

[Khan, Sohail]

Dear List,

I have performed a time course analysis using limma, as described in "Bioinformatics and Computational Biology Solutions ........".
How can I get a list of differentially expressed genes?  I've tried the code below:
sel.dif<-p.adjust(fit2$F.p.vlaue,method="fdr") <0.05
This produces a logical vector, right?.  I would like a table of differentially expressed genes with p vales etc.  Sorry, if I missed this in the limma user's guide.  Thanks for any suggestions.


Sohail Khan
Scientific Programmer
COLD SPRING HARBOR LABORATORY
Genome Research Center
500 Sunnyside Boulevard
Woodbury, NY 11797
(516)422-4076